Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq82 194 3e-44 seq27 102 2e-16 seq1 87.8 3e-12 >seq82 Length=92890 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||| || || || || ||||| |||||||| || |||||| Sbjct 12950 CCACCACGCAGGCGGAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAG 13009 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| ||||| | |||||||| || ||| Sbjct 13010 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGA 13069 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| | ||||||| ||||| ||||| | |||||| || Sbjct 13070 ATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCCACC 13129 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||| || || || || || || ||||||||||| || ||||| Sbjct 13130 TCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 167 bits (184), Expect = 4e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||||||| | ||||||||||| || ||||| || ||||| Sbjct 12721 TCCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGA 12780 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||| | || || || |||||||| || ||||| ||||| | || ||||| || || Sbjct 12781 AAGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGG 12840 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 || || ||||| || || ||||| | ||| || ||||| ||||| ||| || || | Sbjct 12841 GATACCCTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTC-GCTCGACTCAA 12899 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| |||||||| ||||| || || ||||||||||| |||||||| Sbjct 12900 CTTCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | ||| || || ||||| || |||||||| || || || Sbjct 13178 CCACCACGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 13237 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| || | | ||| ||||| || ||| Sbjct 13238 AGGGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGA 13297 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| | ||||||| |||||||| |||| ||||| ||| Sbjct 13298 ATGCCTTCCTTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACT 13357 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 13358 TCGAGTGTGATGGTCTTGCCGGT 13380 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || ||||| || ||||||||||| || ||||| Sbjct 13468 CCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 13527 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| |||||||| || | | || ||||| || || Sbjct 13528 AAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGG 13587 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| |||||| |||||||| || | || ||||| Sbjct 13588 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACC 13647 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 13648 TCGAGGGTGATGGTCTTGCCGGTGA 13672 >seq27 Length=812739 Score = 102 bits (112), Expect = 2e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || ||| |||||||||| |||||| | Sbjct 400405 CATGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGC 400464 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| || | | ||||| || || Sbjct 400465 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTGGAGTTGTATACCTTGGTGTTGCC 400524 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || | |||||||| || ||||| |||||||||| ||| |||| | ||| Sbjct 400525 AAGAGCCAAGAGCAGACGGTCAGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTT 400584 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 |||||| | || ||||| | || ||| || ||| |||| Sbjct 400585 CATGCCCAGCAGAGCACAGGGAAGAGCCTCGGTAAGGAACTCCT 400628 >seq1 Length=650390 Score = 87.8 bits (96), Expect = 3e-12 Identities = 324/501 (65%), Gaps = 10/501 (2%) Strand=Plus/Minus Query 176033 CTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTAAATCCTGT 176092 ||||| || || || |||||| ||||||||||| || || | || || | || || Sbjct 365186 CTTCAGGTTCTCCACAATATCCATGGGGTTGTAATTAGGTATTTCTGTACTCCAACCAGT 365127 Query 176093 TCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATTCCGG 176152 || || || ||||||||||| |||| | || ||| |||| ||||| || || Sbjct 365126 ACCAATACCACTGGATCCATTCACAAGGATAGTTGGTATGATGGGGACATACATCTCAGG 365067 Query 176153 TTCAATCCGGTCGCCGTC--ATCCTCGAGGTAGTTCAGCAGACGCTCGTC--GGCCTTGT 176208 || ||| | | |||||| || ||| ||| |||| |||| ||||| || | || Sbjct 365066 CTCGATCTGCTTGCCGTCCGATTCTC--CGTAATTCAACAGAGCATCGTCATGGGC--GT 365011 Query 176209 GGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGT 176268 |||| | | || | | |||||| || | || | |||||||| || ||| | Sbjct 365010 GGAATAGACGACGTGCGAAGGGGGAGAGGCGAGTATAAATATACCTGGCGCTGGCAGCAT 364951 Query 176269 CCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTAT 176328 | || || | | ||| |||||||| | || | ||| | |||||||||| | Sbjct 364950 CGAAACCACCCTTCAAGCGCGAACCGAAGTTACCACTAGGTTCCAAGTAATTGATGTTGT 364891 Query 176329 TCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGT 176388 | || || || | | ||| |||| ||||| || | |||||| | ||||| || |||| Sbjct 364890 TAGAGCCGACAAAATTTTGTGCCAAACCGACAATAGTGCCCTGCATCGACGCTTCACCGT 364831 Query 176389 GGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTA 176448 | |||| | | | || | | || || |||| ||||||||| |||| || Sbjct 364830 GAAGATAATCTGTGGATCCAGAAACGGAACCAGCCAACTCAACGACTTTGACATCTT-TA 364772 Query 176449 CG-AGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCG 176507 || | || || || | | ||| | ||| ||||| ||||| || ||||| Sbjct 364771 CGAATATTTCGTCGGAAACAGGTGTACATGACCTTGCGCTGACCAGGCTTGAGTCCATCC 364712 Query 176508 ACGACCGACGGAATGGAACGC 176528 | ||| || |||||||||||| Sbjct 364711 ATGACGGAGGGAATGGAACGC 364691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619082159360