Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq82 145 6e-30 seq52 86.0 5e-12 >seq82 Length=92890 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || |||||||| || |||||||| ||| Sbjct 12947 ATACCACCACGCAGGCGGAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCG 13006 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||||||| || || |||||| ||||||||||||||||||| ||| Sbjct 13007 GAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGA 13066 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | || | ||||| | ||||| Sbjct 13067 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCC 13126 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| |||||||| || || ||||| ||||| Sbjct 13127 ACCTCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | || || || | || || ||||| ||||||||||| ||| Sbjct 12722 CCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAA 12781 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || || || | || ||||||||| ||||||| ||||| ||||| ||||| Sbjct 12782 AGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGG 12841 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || || || ||||| |||| | || | |||||| | || || || Sbjct 12842 ATACCCTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACT 12901 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || || || ||||| || || || || |||||||| Sbjct 12902 TCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 >seq52 Length=336907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||||||||| || | | || || || | || || || || || |||||||| || Sbjct 188357 AATACCGCCACGGAGACGGAGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 188416 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | || ||| || ||| || || || || ||||| |||| || |||||||| ||||| Sbjct 188417 GGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCCGG 188476 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTT 114298 |||||||| || ||||| |||||| Sbjct 188477 GGGAATGCCCTCCTTGTCCTGAATCTT 188503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132925328256