Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq27 262 7e-65 seq20 201 2e-46 >seq27 Length=812739 Score = 262 bits (290), Expect = 7e-65 Identities = 381/526 (72%), Gaps = 29/526 (6%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || |||||| |||||||| |||||||| || |||||| | || | || | | || Sbjct 400929 CCATGCATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATC-ACAGACAAGAACTCGAC 400871 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || ||||| | || |||||||| ||||||||| ||| |||| Sbjct 400870 TTTTGCCACCCGCCTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTCCTT 400811 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAAC 42809 || |||||||| ||||||||| || ||| | ||||||||| || |||||||| ||| Sbjct 400810 TGCTTCCATCTTTTGGCTCAAGAAGC--GTGGCCTGATGCCCGGTCTGACCTTCTCCAAC 400753 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || |||||| | || ||||| |||| | |||||||| ||| | || ||||| Sbjct 400752 GAGCTCATCTCTCGTGATGAGGGCATGCACTGCGACTTTGCTTGCTTGCTCTTCTCA--- 400696 Query 42870 CACCTCAGGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 | ||||| |||| |||| | ||||| ||| ||| |||||||| ||||| ||| Sbjct 400695 CTCCTCA---ACAACCGCCCCAGCAAGGATGCCGTCAAGGCTATCATCACTGAGGCTGTG 400639 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC-CTGGTCGGCATGAACCA 42985 ||||||||| |||||||||| || || | || ||| ||| | ||| | ||||||||| Sbjct 400638 GAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCCC-TGTGCTCTGCTGGGCATGAACGC 400580 Query 42986 CGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCT 43045 | ||||||||||| ||||||| ||| ||||| |||| ||| || | ||| ||| Sbjct 400579 CAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGTCTGCTCT------TGGCTCT 400526 Query 43046 CAGC--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTT 43099 || | || | |||||| | | |||||||||||| ||||||||||||||| | Sbjct 400525 TGGCAACACCAAGGTATACAACTCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCT 400466 Query 43100 GGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | |||||||||||||| || |||||||| |||| ||||||||| Sbjct 400465 TGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAG 400420 >seq20 Length=946066 Score = 201 bits (222), Expect = 2e-46 Identities = 510/766 (67%), Gaps = 26/766 (3%) Strand=Plus/Plus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||| ||||||||||| || ||||| || | || |||| | |||||| |||||||| Sbjct 121174 GGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAG 121233 Query 244747 GTTACTGCACT--TGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 |||| | ||| |||||| || |||| || || ||| ||| ||||||||| ||| Sbjct 121234 GTTA--GAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCC 121291 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| ||||||||||| || || || ||| || |||| | | | |||||| Sbjct 121292 TTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAGC 121351 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | ||| || ||| ||| | |||||| |||||| || ||| || | Sbjct 121352 TTCTGAGCACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATGGTAGAGCTCT 121411 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCC--GGGGCACGACGCCGGGCACATGAGAC 244982 || ||||| ||| |||| || | ||||| ||| | || | ||||| | | Sbjct 121412 TCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTG--GGGCAGAACAATG 121469 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 |||| || ||| |||| ||| | || |||||| || || |||||||||||||| | || Sbjct 121470 TCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGA 121529 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCA 245101 |||| || | || | || ||| ||| ||| ||||| | ||| || | || || Sbjct 121530 AGAGATCGCGGGCACGAACTTCTTCCTTGCC-GTGATTCTTGCGCAGGTCAAGGAAACCA 121588 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 ||||| || | ||||| ||||| | ||||| || | || || || ||||||||||| Sbjct 121589 AAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTTGTTGCCA 121648 Query 245162 CCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 ||||| || | | | ||||| |||| | | || || |||| | | || Sbjct 121649 CCCTGATCGA----CATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACC 121704 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA 245277 ||| || || || ||||| |||||| | ||| || | | || ||| |||| | Sbjct 121705 GTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCAC---GGATGC-GATGCA 121760 Query 245278 CAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 ||| || | ||||| || |||||||||||| || ||| |||| | ||||| Sbjct 121761 CATTGAGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGT 121820 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT 245393 || ||||| |||||||| |||||||| | || ||||| || |||| ||| ||| Sbjct 121821 AAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCG 121880 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || ||| | |||||| || |||||| ||||| || ||||| Sbjct 121881 AAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTA 121926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335800378880