Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq82 129 1e-24 >seq82 Length=92890 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||||| || || || ||||| || || || || || |||||| Sbjct 12758 TCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAG 12817 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | ||||| || || ||||||||||| || | || || || Sbjct 12818 ATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTTACATTG 12877 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||||| || ||||| | ||||| ||||| || ||||| ||||||||| Sbjct 12878 TCGATTGTGTCGCTCGACTCAACTTCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACG 12937 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 12938 AAGATCTGCAT 12948 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | ||| | || |||||| ||||| || ||||||| | Sbjct 12950 CCACCACGCAGGCGGAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAG 13009 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| | || || || |||||||| ||||||||||| ||| Sbjct 13010 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTG---GTCTGGA 13066 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || || || || | || ||||| || || | || ||||| Sbjct 13067 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCC 13126 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || ||||||||||||||||| || ||||| Sbjct 13127 ACCTCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 111 bits (122), Expect = 4e-19 Identities = 151/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || || | ||| ||| |||||||| || ||||||| Sbjct 13468 CCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 13527 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | ||||| || ||||| | || ||||| |||||||||| ||||| || ||||| Sbjct 13528 AAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGG---TCTGGA 13584 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| || || ||||||||||| || ||| || || || || || | ||| || || Sbjct 13585 GGGATGCCCTCCTTATCCTGGATCTT-GCTCTTGACATTGTCGATGGTATCCGAAGACTC 13643 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||| ||||| ||||| ||||| ||||| Sbjct 13644 TACCTCGAGGGTGATGGTCTTGCCGGT 13670 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || || || ||||| || ||||| | Sbjct 13178 CCACCACGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 13237 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| |||||||||| || || || | || Sbjct 13238 AGGGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGA 13297 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| |||| || ||||| || || | ||| ||||| ||| Sbjct 13298 ATGCCTTCCTTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACT 13357 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| ||||| ||||| ||||||| Sbjct 13358 TCGAGTGTGATGGTCTTGCCGGTCA 13382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650047075264