Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq20 275 7e-69 >seq20 Length=946066 Score = 275 bits (304), Expect = 7e-69 Identities = 1129/1748 (65%), Gaps = 49/1748 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 120293 CGGAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAGTG 120352 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||| | || || | |||| || ||||| | ||||| || || ||||| Sbjct 120353 ATCTTACCCATGGTGGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATGAAA 120412 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 113776 ||||| || || ||||| | || | | | ||| ||||| ||||| || Sbjct 120413 GCACCACGGTCAGCGGCCATCTGGATGATAGTGCGCTGAGAGATCTCCCAGACAGTCTTG 120472 Query 113777 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTG 113836 |||||||| || | || || ||||| | || || || ||||| ||| | Sbjct 120473 TAGAGGTTTTTGGTCTCTTCAGGGATGTTGGGAATTCGCTGAATCGAGCCGCCCTCAGCA 120532 Query 113837 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG- 113895 | ||| | | |||||| | || ||||||||||| || | ||| |||| | || Sbjct 120533 ATGATGCGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAGCAGC 120592 Query 113896 -ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTC 113953 ||| | |||| || ||||| || || || || | ||| ||||| || | Sbjct 120593 CATGGGT--TGACCACTTGGAACTCTCCGGCAAGCACACGGCG-AGAGTAGATGTTCGAT 120649 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||||||||||||||| || ||||| || | ||||| | || ||||| || |||||| Sbjct 120650 GTGTATGGCTCAAAGCATTCGTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGGCATG 120709 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 ||||| | ||| ||| ||| |||| || | | ||| ||||| | | || Sbjct 120710 GGTGCAACGAGTAGGGAGTTGCGGACGCCATGCTGGGCAATCTTCTCCTTCAATGAAGCC 120769 Query 114074 CAGTCGTAGTTGAGCTTTG--TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 114131 ||||| || || | || | | | | ||| | ||| ||||||| || || | Sbjct 120770 CAGTCCCAGA-GATCAGTGGGTGTGACACC-CCAGAGATCGTACTGGAGCTGGCCCTGAG 120827 Query 114132 AGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC--GCCAAT-TCGGAGC 114188 | |||| || || | |||||||||| ||||| || ||| | |||| ||| | Sbjct 120828 ATACTGGTGAACCTTGGTATGTCTCGTACGGGCC---AAGCTCTTTGGCAATGTCGCAAG 120884 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 114248 | ||| || ||||| || || || || || || || || | ||| |||| Sbjct 120885 ATGAAGTGAGAGCAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGCTTCTTTGCCT 120944 Query 114249 CGTCGGAATCAAACGCGAGTCGGCACAAA---ATAAATACATCCGCGAGACCTTGGACAC 114305 || | || ||||| | |||| |||| | || |||| || |||||||| |||| Sbjct 120945 CGGCTGACTCAAAGGGCAGTCT---CAAAGCGAGGAAAGCATCAGCAAGACCTTGTACAC 121001 Query 114306 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAAT 114365 | || ||||| || | || | | ||| || || ||| || ||||| | Sbjct 121002 CAAGACCAATGGGCCTGTGACGGAAGTTACTGCGGCGTGCCTCCTCAACAGGATAGTGGT 121061 Query 114366 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 114425 | || || | | |||| ||||| |||||||||| |||| ||||||||| || | Sbjct 121062 TGACCTCAATGATCTTATTGAGATTGCGAGTGACAACCTGAGTGACTTCATGAAGTTTCT 121121 Query 114426 CGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCC 114481 | | || || || | | ||| || | || || | || || |||| || || Sbjct 121122 GGAAGTCGAACTCGCCA--CGCTT-ATAGTCA-ACGAAAGATGGCAAAGCGAGAGAGGCA 121177 Query 114482 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTT 114541 || || || |||| |||||| | |||| ||||| ||||| || || || | || Sbjct 121178 AGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAGGTTA 121237 Query 114542 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAA 114601 ||||| ||||| || | |||||| || || ||| |||| || ||||||||||| Sbjct 121238 GAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAT 121297 Query 114602 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGC 114660 |||||| | || | || || || || || | || |||||| || | ||||| | || | Sbjct 121298 AGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAGCTTCTGA 121357 Query 114661 GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA-CTTTGTGTAGAGGGCTTCAA 114719 | | | ||||| || | | || ||||| |||||| | || |||||| |||||| Sbjct 121358 G-CACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATG-GTAGAGCTCTTCAA 121415 Query 114720 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 114779 |||| || || | | || | || || || |||| | |||||||| | | ||||| Sbjct 121416 ACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATT 121475 Query 114780 GACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGAT 114839 ||| ||||| |||||||||||||| || |||||||||||||| || ||||||||| Sbjct 121476 CACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGAAGAGAT 121535 Query 114840 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 114899 | || ||| ||||||| | || ||||| |||| || | || | | || || Sbjct 121536 CGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAGACAT 121595 Query 114900 CCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC-----CTTACGACGACCAGCCT 114953 | || ||||| || || ||||| | || | || |||| ||| | | ||| ||| Sbjct 121596 CAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTT--GTTG-CCACCCT 121652 Query 114954 GGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATT 115013 | | ||||| | || ||| || | || |||||||| ||||||| ||| | || Sbjct 121653 GATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGAAG 121712 Query 115014 GGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACC 115071 ||||| || || |||| || ||| | | |||| | || ||| | | | ||| Sbjct 121713 TACCATTAGTGCCTCCGATGTATGAGCC--AGTGGCACGGATGCGATGCACATTGAGACC 121770 Query 115072 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTC 115131 |||||| || || ||| ||||| | || || | | || || |||| || || || Sbjct 121771 AATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTC 121830 Query 115132 GATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 115191 || ||| |||| | | ||||||||||| ||||| || ||| ||||| || Sbjct 121831 AATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCC 121890 Query 115192 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGG 115250 ||||||||||| || || | ||||| |||| ||| | |||||||| | ||||| | Sbjct 121891 TGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAA-GTACTTCTGGGACATGTAGTCGTATG 121949 Query 115251 TCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 115310 | || | | ||||||||| || || || || | | || ||||| | ||| | Sbjct 121950 TTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCAGCATAT 122009 Query 115311 ATTGGGGT 115318 ||| ||| Sbjct 122010 GTTGTGGT 122017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351449527040