Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq27 140 3e-28 seq82 96.9 3e-15 >seq27 Length=812739 Score = 140 bits (154), Expect = 3e-28 Identities = 352/525 (67%), Gaps = 29/525 (6%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCG-AGAGCGACACCGC 52384 || || ||| | ||||| ||||| | ||||| || |||||| ||| | | | | | Sbjct 400932 GTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATCACAGA-CAAGAACTC 400874 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || | ||| ||| | || |||||||| |||||||| | || || ||| Sbjct 400873 GACTTTTGCCACCCGCCTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTC 400814 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 |||||| ||||||||| | || | | ||| | |||||||| ||||| ||| ||| Sbjct 400813 CTTTGCTTCCATCTTTTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTCTCCAA 400754 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACTA--- 52558 |||| | || || || || || || ||||| |||||||| ||| |||| || Sbjct 400753 CGAGCTCATCTCTCGTGATGAGGGCATGCACTGCGACTTTGCTTGCTTGCTCTTCTCACT 400694 Query 52559 ---CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615 ||| | ||| || | || |||| | | || | || || ||| || Sbjct 400693 CCTCAACAACCGC----CCCAGCAA--GGATGCCGTCAAGG--CT----ATCATCACTGA 400646 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 ||| |||| ||||| ||||||| |||| | || || || | ||||||||||| Sbjct 400645 GGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCCCTGTGCTCTGCTGGGCAT 400586 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 |||||| | ||||||| ||||||| |||||||| || || |||||| | || ||| Sbjct 400585 GAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGTCTGCTCTTG--GCT 400528 Query 52736 C-GGGCA--GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 | |||| |||| ||| | |||| | || || || || || ||| | ||||| || Sbjct 400527 CTTGGCAACACCAAGGTA-TACAACTCCACAAACCCCTTCGACTTCATGGAGAACATCTC 400469 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| |||||||||||||| || |||||||| ||||| || || Sbjct 400468 GCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 400424 >seq82 Length=92890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || ||||| | | | || || || || |||||||||||| Sbjct 12950 CCACCACGCAGGCGGAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAG 13009 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | |||| |||||||||||||| ||||| Sbjct 13010 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGA 13069 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || | ||| || | ||||| | || |||| Sbjct 13070 ATACCTTCCTTGTC-TTGAATCTTGGACTTGACGTTG-TCGATTGTGTCCGATGATTCCA 13127 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||||||| || || ||||| ||||| Sbjct 13128 CCTCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | ||||| || ||||||||||||||| Sbjct 12722 CCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAA 12781 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | || ||||| | |||| || ||||| ||||| ||||| Sbjct 12782 AGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGG 12841 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| || |||| |||| || | |||||| ||||||| || Sbjct 12842 ATACCCTCCTTATCCTGGATCTTGGACTTTACATTG-TCGATTGTGTCGCTCGACTCAAC 12900 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || || || |||||||| Sbjct 12901 TTCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260613455360