Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq82 118 1e-21 seq27 104 2e-17 >seq82 Length=92890 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | || || || ||||| || ||||| ||| | Sbjct 13468 CCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 13527 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| ||||| ||| ||||||| |||||||| || ||||| Sbjct 13528 AAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGG 13587 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| || ||||| | |||| ||| |||| | ||| || Sbjct 13588 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACC 13647 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 |||| ||| | || |||||||| Sbjct 13648 TCGAGGGTGATGGTCTTGCCGGT 13670 >seq27 Length=812739 Score = 104 bits (114), Expect = 2e-17 Identities = 280/425 (66%), Gaps = 15/425 (4%) Strand=Plus/Minus Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219 |||||||| |||||||| ||| |||||| | || |||| | || | || Sbjct 400839 GTCGAGGGTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTTTGGCTCAAGAAGCGTGGC 400780 Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279 | |||||||| || || || ||||||||| ||||| | || || ||| ||||| | Sbjct 400779 CTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACTGC 400720 Query 47280 AACTTTGCCTGT---CTCTACT-ACAACACTAGAGTCGATCAA--AAGTTGGACGTGCCC 47333 ||||||| || |||| || || | | | | || | | ||| || | Sbjct 400719 GACTTTGCTTGCTTGCTCTTCTCACTCCTCAACAACCGCCCCAGCAAG---GATG----- 400668 Query 47334 ACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCT 47393 |||||| | || | | || || || | || ||| |||||| | |||||||| Sbjct 400667 -CCGTCAAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGGCT 400609 Query 47394 CTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTC 47453 || ||| || | |||| |||||||| | | ||| | ||||||| || |||||| Sbjct 400608 CTTCCCTGTGCTCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTC 400549 Query 47454 GCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTC 47513 || ||||| |||||| | || | ||||| | ||| || || || || ||| Sbjct 400548 GCTGACCGTCTGCTCTTGGCTCTTGGCAACACCAAGGTATACAACTCCACAAACCCCTTC 400489 Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGC 47573 || || ||| | ||||| ||||| | |||||||||||||| || |||||||| ||||| Sbjct 400488 GACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGT 400429 Query 47574 GAATA 47578 || || Sbjct 400428 GACTA 400424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499088197120