Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21]
288 sequences; 32,067,383 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq82 93.3 4e-14
seq20 82.4 7e-11
>seq82
Length=92890
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || | | ||| || || || || |||||||||||||| || || |||
Sbjct 13465 ATACCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 13524
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | || ||||| ||| | ||||| || |||||||| ||
Sbjct 13525 GACAAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGA 13584
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || ||||| || || || |||| || | ||| || ||||||||
Sbjct 13585 GGGATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCT 13644
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| ||||| || | || ||||||||
Sbjct 13645 ACCTCGAGGGTGATGGTCTTGCCGGT 13670
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
|| ||||| ||| | ||||| ||||||||||| || ||||||||||| ||||| || ||
Sbjct 13259 TGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATC 13318
Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313
|| |||| || | || | ||| || || || ||||||||||| || | || |||||
Sbjct 13319 TTCGACTTGA-CGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTGATGGTCTTGCC 13377
Query 45314 GGT 45316
|||
Sbjct 13378 GGT 13380
>seq20
Length=946066
Score = 82.4 bits (90), Expect = 7e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||||| || || || ||||||||||| ||||| || || ||||| | || |||
Sbjct 122031 AAGGTTGCTGAGCGACCACAACATATGCTGATGCGTGTTGCCGTAGGCATACATGGAGAA 121972
Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017
||||| ||||| |||| ||||| ||||| | ||||| || || | ||||| |||||
Sbjct 121971 GACATTGAAAAGGCGATTGAAACATACGACTACATGTCCCAGAAGTACTTCACACACGCT 121912
Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTT 123070
||||| | ||| ||| ||||| | ||||||| |||| || || ||
Sbjct 121911 TCCCCCACACTCTTCAACGCAGGCACACCTTCGCCTCAGATGTCATCTTGCTT 121859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452001572788480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |