Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq82 93.3 4e-14 seq20 82.4 7e-11 >seq82 Length=92890 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| || || || || |||||||||||||| || || ||| Sbjct 13465 ATACCACCGCGCAGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 13524 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| ||| | ||||| || |||||||| || Sbjct 13525 GACAAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGA 13584 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || ||||| || || || |||| || | ||| || |||||||| Sbjct 13585 GGGATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCT 13644 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316 || ||||| || | || |||||||| Sbjct 13645 ACCTCGAGGGTGATGGTCTTGCCGGT 13670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | ||||| ||||||||||| || ||||||||||| ||||| || || Sbjct 13259 TGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATC 13318 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | ||| || || || ||||||||||| || | || ||||| Sbjct 13319 TTCGACTTGA-CGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTGATGGTCTTGCC 13377 Query 45314 GGT 45316 ||| Sbjct 13378 GGT 13380 >seq20 Length=946066 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| || || || ||||||||||| ||||| || || ||||| | || ||| Sbjct 122031 AAGGTTGCTGAGCGACCACAACATATGCTGATGCGTGTTGCCGTAGGCATACATGGAGAA 121972 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| ||||| |||| ||||| ||||| | ||||| || || | ||||| ||||| Sbjct 121971 GACATTGAAAAGGCGATTGAAACATACGACTACATGTCCCAGAAGTACTTCACACACGCT 121912 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTT 123070 ||||| | ||| ||| ||||| | ||||||| |||| || || || Sbjct 121911 TCCCCCACACTCTTCAACGCAGGCACACCTTCGCCTCAGATGTCATCTTGCTT 121859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001572788480