Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq20 239 6e-58 seq8 82.4 9e-11 >seq20 Length=946066 Score = 239 bits (264), Expect = 6e-58 Identities = 1117/1744 (64%), Gaps = 41/1744 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 120293 CGGAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAGTG 120352 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||| | || || | |||| || ||||| | ||||| || || ||||| Sbjct 120353 ATCTTACCCATGGTGGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATGAAA 120412 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || || || || ||||| | || | | | ||| ||||| ||||| || Sbjct 120413 GCACCACGGTCAGCGGCCATCTGGATGATAGTGCGCTGAGAGATCTCCCAGACAGTCTTG 120472 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 |||||||| || | || || ||||| | || || || ||||| || | Sbjct 120473 TAGAGGTTTTTGGTCTCTTCAGGGATGTTGGGAATTCGCTGAATCGAGCCGCCCTCAGCA 120532 Query 115798 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 | ||| | | |||||| | || ||||||||||| || | ||| |||| | || Sbjct 120533 ATGATGCGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAGCAGC 120592 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGT 115916 ||||| || ||||| || || || || | ||| |||||||| | || Sbjct 120593 CATGGGTTGACCACTTGGAACTCTCCGGCAAGCACACGGCG-AGAGTAGATGTTCGATGT 120651 Query 115917 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 115976 ||||||||||||||| || ||||| || | ||||| | ||| ||||| || |||||||| Sbjct 120652 GTATGGCTCAAAGCATTCGTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGGCATGGG 120711 Query 115977 TGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCA 116036 ||| | ||| ||| |||||||| || | ||| ||||| | | |||| Sbjct 120712 TGCAACGAGTAGGGAGTTGCGGACGCCATGCTGGGCAATCTTCTCCTTCAATGAAGCCCA 120771 Query 116037 GTCGTAGTTGAGCTTTG--TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGAC 116094 ||| || || | || | | | | |||| | ||| ||||||| || || || Sbjct 120772 GTCCCAGA-GATCAGTGGGTGTGACAC-CCCAGAGATCGTACTGGAGCTGGCCCTGAGAT 120829 Query 116095 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGGAGCTC 116151 |||| || || | ||||||| || ||||| || ||| | |||| ||| | Sbjct 120830 ACTGGTGAACCTTGGTATGTCTCGTACGGGCC---AAGCTCTTTGGCAATGTCGCAAGAT 120886 Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 116211 | ||| || ||||| || || || || || || || || | ||| |||||| Sbjct 120887 GAAGTGAGAGCAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGCTTCTTTGCCTCG 120946 Query 116212 TCGGAATCAAACGCGAGACGGCACAAA---ATAAATACATCCGCGAGACCTTGGACACCG 116268 | || ||||| | || | |||| | || |||| || |||||||| ||||| Sbjct 120947 GCTGACTCAAAGGGCAGTCT---CAAAGCGAGGAAAGCATCAGCAAGACCTTGTACACCA 121003 Query 116269 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTC 116328 || ||||| || | || | | ||| || || ||| || ||||| || Sbjct 121004 AGACCAATGGGCCTGTGACGGAAGTTACTGCGGCGTGCCTCCTCAACAGGATAGTGGTTG 121063 Query 116329 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 116388 || || | | |||| ||||| |||||||||| |||| ||||||||| || | | Sbjct 121064 ACCTCAATGATCTTATTGAGATTGCGAGTGACAACCTGAGTGACTTCATGAAGTTTCTGG 121123 Query 116389 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAG 116444 | || || || | | ||| || | || || | || || |||| || || || Sbjct 121124 AAGTCGAACTCGCCA--CGCTT-ATAGTCA-ACGAAAGATGGCAAAGCGAGAGAGGCAAG 121179 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || || |||| |||||| | |||| ||||| ||||| || || || | || || Sbjct 121180 GTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAGGTTAGA 121239 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 ||| ||||| || | |||||| || || ||| |||| || ||||||||||| || Sbjct 121240 ACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTATAG 121299 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGG 116623 ||| | || | || || || || || | || |||||| || | ||| | | || | | Sbjct 121300 CATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAGCTTCTGAG- 121358 Query 116624 CTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA-CTTTGTGTAGAGGGCCTCAAAC 116682 | | ||||| || | | || ||||| |||||| | || |||||| | |||||| Sbjct 121359 CACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATG-GTAGAGCTCTTCAAAC 121417 Query 116683 TCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTG 116741 || || || | || | || | || || || |||| | || ||||| | | ||||| Sbjct 121418 TCATCGCC-ATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATTC 121476 Query 116742 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 ||| ||||| || ||||||||||| || |||||||||||||| || |||||||||| Sbjct 121477 ACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGAAGAGATC 121536 Query 116802 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 116861 || ||| ||||||| | || ||||| |||| || | || | | || ||| Sbjct 121537 GCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAGACATC 121596 Query 116862 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTT 116918 || ||||| || || ||||| | || | || ||| ||| ||| |||| | Sbjct 121597 AGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTTGTTGCCACCCTGATC 121656 Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978 ||||| | || || ||| | || |||||||| ||||||| ||| | || || Sbjct 121657 GACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGAAGTACC 121716 Query 116979 ATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATA 117036 ||| || || |||| || ||| | |||| | || || | | | ||||||| Sbjct 121717 ATTAGTGCCTCCGATGTATGAGCC--AGTGGCACGGATGCGATGCACATTGAGACCAATA 121774 Query 117037 CCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 117096 || || || ||| ||||| |||| || | | || || |||| || || || || Sbjct 121775 CCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTCAATG 121834 Query 117097 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCG 117156 ||| |||| | | || |||||||| ||||| || ||| ||||| || ||| Sbjct 121835 CTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCCTGCG 121894 Query 117157 TTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTC 117215 |||||||| || || | ||||| |||| ||| | |||||||| | ||||| || || Sbjct 121895 TTGAAGAGTGTGGGGGAAGCGTGTGTGAA-GTACTTCTGGGACATGTAGTCGTATGTTTC 121953 Query 117216 CAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTG 117275 | | ||||||||| || || || || | | || ||||| | ||| | ||| Sbjct 121954 AATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCAGCATATGTTG 122013 Query 117276 GGGT 117279 ||| Sbjct 122014 TGGT 122017 >seq8 Length=981941 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTCAAAGAT 12940 || || |||||||| ||||| | || || || || | || || ||| |||| | Sbjct 473287 GCATCGATTTCGTCGATGAAGATAATGCAAGGAGTGCTCTTG-CGAGCATTGGCAAACAA 473229 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG-GAAC 12999 ||||||||| | ||||||||||| ||||||||||||||||| | || || || Sbjct 473228 ATCTCGCACACGTGATGCACCGACACCGACAAACATCTCCACAAACTCGGAACCGCTCAC 473169 Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 | || ||| || ||| || || || || ||||| ||||| |||||||| || | Sbjct 473168 GCT-GAAGAAAGGCACGCCTGACTCTCCAGCAGTGGCTTTTGCGAGAAGGGTCTTACCAG 473110 Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | |||||| || | ||||| ||||| || |||||| | || || Sbjct 473109 TACCTGGTGGGCCAGAGAGAATAGCACCGCGAGGGATCTTCGCGCC 473064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504991374080