Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq20 149 1e-30 seq27 118 2e-21 >seq20 Length=946066 Score = 149 bits (164), Expect = 1e-30 Identities = 334/494 (68%), Gaps = 7/494 (1%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACG-GCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || ||||| ||||||| || || |||| | | | | ||||||||||| Sbjct 120248 TCTTGATCGACGGTGAATTGAATGG-GTGCAGAAGCAGCCATAGTACGGAGATAGTACAT 120306 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || || || ||| || | ||||||||||| | || | || | | Sbjct 120307 GCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAGTGATCTTACCCATGGT 120366 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 ||| || |||||| ||||||| ||||||| ||||| ||||||| | || || || Sbjct 120367 GGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATGAAAGCACCACGGTCAGC 120426 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 |||||| | ||| || || ||| || |||||||| || |||||| | | || | |||| Sbjct 120427 GGCCATCTGGATGATAGTGCGCTGAGAGATCTCCCAGACAGTCTTGTAGAGGTTTTTGGT 120486 Query 204076 GTGTTGAGGCACATCTTCCCACGTC-CTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 | || ||| || || | || ||| ||||||||| || || || | | || Sbjct 120487 CTCTTCAGG--GATGTTGGGAATTCGCTGAATCGAGCCGCCCTCAGCAATGATGCGGTTC 120544 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | ||| ||| | |||| || || ||| | ||| ||||||| Sbjct 120545 TTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAGCAGCCATGGGTTGACC 120604 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | || || ||||||| ||||| | || | | | | ||| ||| |||| || || Sbjct 120605 ACTTGGAACTCTCCGGCAAGCACACGGCGAGAGTAGATGTTCGATGTGTATGGCTCAAAG 120664 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 ||||||||||||| ||| |||| || ||| || |||||||| || | ||| ||| Sbjct 120665 CATTCGTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGGCATGGGTGCAACGAGTAGG 120724 Query 204314 GAGTTGCGCACACC 204327 |||||||| || || Sbjct 120725 GAGTTGCGGACGCC 120738 >seq27 Length=812739 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || | ||| |||||||||||||||| ||||| || |||||||||| ||||||||| Sbjct 400700 AAGAGCAAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAG 400759 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | || || ||||| | |||||| ||||||||||| |||| ||||| | || Sbjct 400760 AAGGTCAGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCA 400819 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| ||||| || || || || || || || | |||||| | ||| Sbjct 400820 CTGAAGAAGATACCCTCGACAGCAGCGAAGGCAACAAGGCGGGTGGCAAAAGTCGAGTTC 400879 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGG 160143 |||| | |||| | ||||| || |||||||| |||||| || Sbjct 400880 TTGTCTGTGATCCATCGCAGAGCCCAGTCGGCCTTCTTGCGGATGCATGG 400929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152337441280