Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq82 140 8e-28 seq52 107 5e-18 seq59 93.3 1e-13 >seq82 Length=92890 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| ||||| || || |||| ||||||||| | | ||| | |||||||| |||||| Sbjct 12974 TGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGC 13033 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||||||||||||||| ||||| ||| ||| ||||| || |||||||| Sbjct 13034 TTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 13093 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| |||| ||||| | || ||| || |||| || || ||||| || || Sbjct 13094 GACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTC 13153 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||| Sbjct 13154 AGAGTCTTGACGAAAATTTG 13173 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||||||||| || || |||||||| |||| ||||||||| | || || Sbjct 13184 CGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTA 13243 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||||||||||||||| | || |||||||| ||| ||| ||| Sbjct 13244 CGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCT 13303 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||| |||| | ||| || || | Sbjct 13304 TCCTTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACTTCGAGT 13363 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 13364 GTGATGGTCTTGCCGGT 13380 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| || |||||||||| ||||||||| | ||| || | |||||| Sbjct 13483 AGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 13542 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| | ||||||||||| ||| || || || ||| Sbjct 13543 TCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCC 13602 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | ||||| || | ||||| ||| Sbjct 13603 TGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACCTCGAGGGTGATGGTC 13662 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 13663 TTGCCGGTGA 13672 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| | || ||||| || || | ||||||||| | | || Sbjct 12728 CGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTT 12787 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| |||||| || ||||||||||| ||||||||||| ||| || || Sbjct 12788 CGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCC 12847 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || ||||| Sbjct 12848 TCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACTTCCAAT 12907 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || || || Sbjct 12908 GTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTG 12945 >seq52 Length=336907 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||||||||||||||| |||| ||||||||| | || ||| | ||||| Sbjct 188376 AGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 188435 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||| || ||||| ||| || || ||| Sbjct 188436 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 188495 Query 199538 TGAATCTTTTGCTTCAC 199554 |||||||| |||||| Sbjct 188496 TGAATCTTGCTCTTCAC 188512 >seq59 Length=254989 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || |||||||| |||| |||||| |||| | ||| | ||||| Sbjct 239623 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCC 239682 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||| |||||| |||||||||||||| ||||| ||||| || Sbjct 239683 TCCAACTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCAGG 239723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178917249779296