Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq82 120 3e-22 seq52 98.7 1e-15 >seq82 Length=92890 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||||| ||| || || || ||||||||||| || || || |||| || Sbjct 12740 ACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCCTCC 12799 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| || ||||| || | |||||||||||| | || | | |||||| ||| | Sbjct 12800 AACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGG 12859 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | ||||||||||| || || |||| |||||||| || Sbjct 12860 ATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACTTCCAATGTGATGGTCTTT 12919 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 12920 CCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || || | ||| |||||| ||||| |||||||| || || || || | Sbjct 13189 ACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGGCC 13248 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| |||||||| |||||||| |||||||| | || | || ||||| Sbjct 13249 GTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCCTT 13308 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||||| ||||| ||| | | | || || ||||| || || | |||| Sbjct 13309 ATCCTGGATCTTCGACTTGA-CGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTGA 13367 Query 46557 TGGTTTTGCCCGTCA 46571 |||| ||||| |||| Sbjct 13368 TGGTCTTGCCGGTCA 13382 Score = 113 bits (124), Expect = 5e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| | ||||| | || ||||||||||| |||||||| Sbjct 13504 TCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAG 13563 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||| | || | || |||||| ||| |||||| |||||| Sbjct 13564 ATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTGA 13618 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| |||||||| | || || ||||||||||| ||||| Sbjct 12986 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAG 13045 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | | |||||||| ||||| ||||| ||| Sbjct 13046 ATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGACTTGA-CGTT 13104 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| |||||||| |||| || || || ||||| ||||| || || || Sbjct 13105 GTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGAC 13164 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 13165 GAAAATTTGCAT 13176 >seq52 Length=336907 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| | || |||||||||||||| || || Sbjct 188396 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 188455 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 |||| |||||| || || | || | || |||||||||| ||||| |||| Sbjct 188456 GATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTT 188509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236365141760