Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq27 239 5e-58 seq82 113 5e-20 seq52 93.3 4e-14 seq59 86.0 6e-12 >seq27 Length=812739 Score = 239 bits (264), Expect = 5e-58 Identities = 576/869 (66%), Gaps = 62/869 (7%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | || ||| | ||| || || |||||||| Sbjct 400439 TTCTCAAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTT 400498 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||| ||||||| | || | | |||||| | ||| || || ||||| Sbjct 400499 GTGGAGTTGTATACCTTGGTGTTGCCAAGAGCCAAGAGCAGACGGTCAGCGACAAACTCA 400558 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTCGG 132802 ||||| || ||||| | || || | | | ||||||||| |||| || | | || |||| Sbjct 400559 ATGTACTGGCACATGAGGTTGGCGTTCATG-CCCAGCAGA-GCACAGGGAAGAGCCTCGG 400616 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | || || |||||||| | || || || |||| ||| || | ||| || || Sbjct 400617 TAAGGAACTCCTGCTCGATCTCCACAGCCTCAGTGATGATAGCCTTGACGGCATCCTTGC 400676 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 | || || | | | ||| | |||||||||||||||||| |||| |||||| | Sbjct 400677 TGGGGCGGTTGTTGAGGAGTGAGAAGAGCAAGCAAGCAAAGTCGCAGTGCATGCCCTCAT 400736 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | || ||||| |||||| ||| |||| |||||||| ||||| || || ||||||| Sbjct 400737 CACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCACGCTTCTTGAGCC 400796 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 |||| |||| || || ||| ||||||| |||||||| || ||||| || || | Sbjct 400797 AAAAGATGGAAGCAAAGGAGCCACTGAAGAAGATACCCTCGACAGCAGCGAAGGCAACAA 400856 Query 133043 GGCGCTCGCCGAACGTGGC-TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 |||| | | || || | ||||| ||| |||||| ||||| ||||| |||||||| Sbjct 400857 GGCGGGTGGCAAAAGTCGAGTTCTTGTCTGT-GATCCATCGCAGAGCCCAGTCGGCCTTC 400915 Query 133102 T---------------CTTTGACGC-----ACG-------------GCATC--------- 133119 | || | ||| ||| |||| Sbjct 400916 TTGCGGATGCATGGAACTGTTACGTGTTAGACGCGTCTTTTCATTTGCATTTTGGTTGGA 400975 Query 133120 ------GTT-TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAG 133170 ||| || ||||| || ||||| | |||| | | | ||| ||| | ||| Sbjct 400976 CTTACTGTTGTCAATGGCATTGAACAA--GTAGTTGCGTTGCTTAGGCTCGCTGATATAG 401033 Query 133171 GTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCG 133230 |||||||||||| || || |||||||||| | ||||||||| ||| || |||||| Sbjct 401034 GTGTCGATGAGGAGAGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCG 401093 Query 133231 TAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCG 133290 || ||||| || || ||| | || || || | ||| |||||||| || || ||| Sbjct 401094 TAGAAGCATCGTGCTTCGGGTATTTGGACCTCGCTGGAGAATCGCTCGACAAGGTTCTCG 401153 Query 133291 TTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCG 133350 ||||| ||||| ||| ||| ||||| || || || ||||| |||||| ||||||| Sbjct 401154 TTGACAATGCCATCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTCG 401213 Query 133351 TTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 | || |||| |||| | ||||||| | |||||||| || || | ||| || || Sbjct 401214 TCATCATTCAGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAGAGATCAATCTCTTCTGCG 401273 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 ||||| || || || ||||| || ||||| Sbjct 401274 GTCCAGAAGGAAGCTTCGGCCTTCTTGTA 401302 >seq82 Length=92890 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || || ||| | || || || | | Sbjct 13176 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCG 13117 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| || || ||||| | ||||| Sbjct 13116 GACACAATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 13058 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 13057 ACAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 12998 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| |||| || |||||||| || || Sbjct 12997 CATCCAGAAAGAATCGACCCTCCATTTGGTACTCCG 12962 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || |||||||| | || || ||| | | | Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | ||||| || |||| || || ||||| || || | |||| Sbjct 12888 GACACAATCGACAATG--TAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACC 12831 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| || || ||| |||| |||| || || || |||||||| Sbjct 12830 AGCAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTTCCGACTACA 12771 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || || | || |||| ||||| || ||| | | ||||| Sbjct 12770 ACATTCAGAAAGAGTCCACATTGCACTTGGTCCTCCGTCTTCGTGGCGG 12722 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| || ||| | | || | | | | || | | || Sbjct 13672 TCACCGGCAAGACCATCACCCTCGAGGTAGAGTCTTCGGATACCATCGACAATG--TCAA 13615 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| || || ||||| || || | ||||| ||||| | || | ||| || Sbjct 13614 GAGCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCTTGATCTTCGCCGG 13555 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 || ||||| || || | |||||| | |||||||||||||||||||||| | || || Sbjct 13554 AAAGCAGCTCGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTCT 13495 Query 38444 GCATTTGGTGCTGCG 38458 || | ||||| || Sbjct 13494 CCACCTTGTGCTTCG 13480 >seq52 Length=336907 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | || |||||||| || || | || ||||| ||||| || Sbjct 188494 GACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAG 188435 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| || ||||||||||||||| ||||| |||| || || ||||| || Sbjct 188434 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACTTGGTCCTC 188375 Query 38457 CGTTTGAGAGGCGG 38470 ||| | | ||||| Sbjct 188374 CGTCTCCGTGGCGG 188361 >seq59 Length=254989 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||||||||| ||||| | ||| ||||| ||| |||| Sbjct 239741 GACAAGGAGGGCATTCCCCCTGACCAACAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAG 239682 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || || || || ||||||||||| ||||| | || || || ||||| || Sbjct 239681 GATGGCCGTACTCTTTCTGATTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTT 239622 Query 38457 CG 38458 || Sbjct 239621 CG 239620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170999377920