Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 430 2e-115 seq5 123 3e-23 seq31 113 6e-20 seq20 113 6e-20 seq13 109 7e-19 >seq1 Length=650390 Score = 430 bits (476), Expect = 2e-115 Identities = 783/1143 (69%), Gaps = 6/1143 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | ||||||||||| ||||| | || ||||| ||||| |||||||||||||| Sbjct 271397 TCACCAGACAAGATGGCGGCCTGGACGGCAGCACCGTAGGCGACGGCCTCATCGGGGTTG 271338 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 271337 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 271278 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||||||||| ||||| || | || || || || ||||| | Sbjct 271277 ATACGGGTAGAACCACCGACCAAGACGATCTCGTGGACGGAGGACTTGTCAATCTTAGCA 271218 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || || || ||||| ||||| | ||| || || ||| Sbjct 271217 TCACGGAGGACACGCTCAACGGGCTCCATGGTGGAGCGGAAGAGATCCTGGCAGAGCTCC 271158 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||||| || ||||| || | || ||| | | || || || Sbjct 271157 TCGAAACGAGCACGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAAGAGAGAGTCGATC 271098 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | ||| || | || ||||| || ||||| || || ||||| Sbjct 271097 TCGATGGAGGTCTGAGCAGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGTTCGG 271038 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| ||||||||||| | ||| | | || || || || ||||| ||||| Sbjct 271037 AGACGGCGAAGGGCACGAGCGTTGGTTGTGAGGTCACGTTTGTGCTTTCGTTTGAACTCA 270978 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | |||||| ||||| || |||||||||||||| || || || Sbjct 270977 GTTGTGAAGTGGTTGACGAGTCTGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 270918 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || || | ||||| || |||||||| | |||||| | | | |||||||| || ||| Sbjct 270917 GCAGTGGACTTGACCTCGAAGATACCCTCCTCAATGGTAAGAAGGGAAACATCGAAGGTA 270858 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||||| || || ||||| ||||| || | | | ||||| ||||||||| Sbjct 270857 CCACCACCCAAATCGAAGATGAGGACGTTGCGCTCACCCTGGGTCTTCTTGTCGAGACCG 270798 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || |||||||| || || || || || || || ||||| || ||| ||||||||||| Sbjct 270797 TAGGCGATAGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGGCCAGCAATG 270738 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | ||||| || || || || || || || ||||| |||||||| || || || ||| Sbjct 270737 AGACCAGCATCCTTGGTGGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGAACAGTAACG 270678 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| |||| | |||||| || || || || | || |||| ||||| | Sbjct 270677 ACAGCGTTGTTGACGGTTCCACCGAGGTAGGACTCGGCAGTCTCCCTCATCTTGGTCAAG 270618 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 ||||| ||||| ||||| |||| | || ||| || || || || || || | Sbjct 270617 ACCATGGATGAGATCTCCTCAGGTGTGAAGGTCTTCTCCTCGCCCTTGAACTCGACCTGG 270558 Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 || | || || ||| || | | || ||| | | ||| |||||||| | Sbjct 270557 ATGACAGGCTT-GCCG--GCCTTGTCAACAATCTTGAAGGGGAAATGCTTCATATCAGCC 270501 Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 ||||||| ||| | ||||| | ||||| || |||||||| || || |||||||| Sbjct 270500 TGGACCTCAGCGTCGGCGAACTTGCGGCCGATCAGGCGCTTTGCGTCGAAGACTGTGTTG 270441 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 |||||||||||| |||||||| |||| ||| ||||| ||||| || || || Sbjct 270440 GCGGGGTTCATGGCGACCTGGTTCTTGGCCGAGTCTCCGATGAGACGCTCGGTA---TCG 270384 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 || || || ||| |||| ||||| ||||| || || |||||||| || || ||||||| Sbjct 270383 GTGAAGGCAACGAACGAAGGGGTGGTTCGGTTACCCTGGTCGTTGGCGATGATTTCTATC 270324 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 | ||| | | ||| ||||| || || ||||| || || | || |||||||| ||| Sbjct 270323 CTGTCATCACGGAAGATACCGACACAAGAGTACGTGGTACCCAGGTCGATACCGATCGCT 270264 Query 8150 TGA 8152 || Sbjct 270263 GGA 270261 >seq5 Length=910210 Score = 123 bits (136), Expect = 3e-23 Identities = 194/277 (70%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || ||||| || ||||| |||| ||| || | ||||| | || || ||||| Sbjct 423206 TCTCCAGCGGTGGCCTTGACAGTGAAGACACCACCCTGAATGTGAAGCAGAGACACATCG 423147 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---- 7599 || ||||||||||| || || | ||||| || ||| | || | ||| || || Sbjct 423146 AAAGTACCACCACCAAGATCGTAGATGAGGACATTCCTCTCCT--TCTCTGACTTTCCAG 423089 Query 7600 -ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| |||||||| || || || || || || || ||||| ||| ||||| Sbjct 423088 AACCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTTCA 423029 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||||| | | || || ||||| ||||| || || ||||| ||||| || | Sbjct 423028 GGCCAGCAATGGCACCGGCGTCCTTCGTGGCTTGACGCTGGTTGTCGTTGAAGTAAGCGG 422969 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 | || || | ||| || | | ||| ||||| ||||| Sbjct 422968 GCACAGTAATGACGGCCTTCTCGACCTTCTTTCCGAG 422932 >seq31 Length=329959 Score = 113 bits (124), Expect = 6e-20 Identities = 221/327 (68%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 185615 ATCGAAATCTTCACCACCGAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACC 185556 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | | | || | ||| || ||||||||||||| || | | || Sbjct 185555 GTTCTGGATCTCGAGAATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCGAC 185496 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | ||| ||| || ||| ||||||||||| |||| ||| || || || || || Sbjct 185495 ------AACGTTGTCGGTGGCCTTGTCGAGACCGTAAGCGAGAGCAGCGGCGGTAGGCTC 185442 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | | ||| || |||||| ||||| || | ||||| || || || || || Sbjct 185441 GTTGACGACACGGAGGACGTTCAGACCAGCGATCTGACCAGCATCCTTGGTAGCCTGACG 185382 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 185381 CTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTCTTGACGTTCTTGCCCAT 185322 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || || || || | || ||||| || Sbjct 185321 GTAGGACTCGGCAGTCTCCTTCATCTT 185295 >seq20 Length=946066 Score = 113 bits (124), Expect = 6e-20 Identities = 389/603 (65%), Gaps = 9/603 (1%) Strand=Plus/Plus Query 105474 GTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACA 105533 ||| || ||||||||||| | || || ||||| | ||| || |||| | || || Sbjct 121402 GTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCA 121461 Query 105534 AAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACAT 105593 ||||||| ||| | ||| | | || || |||||||| | |||||| ||||| | Sbjct 121462 GAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAG 121521 Query 105594 GGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAG 105653 ||| | ||||| || || | | ||||| | || |||||| || | || || Sbjct 121522 GGCATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAG 121581 Query 105654 AAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG-ACCCT-----TT 105707 ||| | | | ||| || |||||||| || | |||| |||| | |||| || Sbjct 121582 GAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTT 121641 Query 105708 ACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAAT 105767 | ||| | || ||| |||||| | || || ||| || || || | ||| ||||| Sbjct 121642 --GTTGCCACCCT-GATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAAT 121698 Query 105768 AATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTG 105827 | ||| | || || ||||| || || | || | ||| | | ||||| | || Sbjct 121699 GAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATG 121758 Query 105828 AACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATC 105887 || | | |||||||| ||||| ||| ||| | ||||| || | ||| || Sbjct 121759 CACATTGAGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTC 121818 Query 105888 GTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGG 105947 ||||||||| || || || |||||||| | |||| ||||| || |||||||| || || Sbjct 121819 GTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGG 121878 Query 105948 TCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAA 106007 ||||| || || ||||| || || || | || || |||| | | || | Sbjct 121879 CGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACAT 121938 Query 106008 CGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCG 106067 ||||||||||| | | | ||||| || | |||||| || || | || || || Sbjct 121939 GTAGTCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACG 121998 Query 106068 CAT 106070 ||| Sbjct 121999 CAT 122001 >seq13 Length=1064643 Score = 109 bits (120), Expect = 7e-19 Identities = 239/356 (67%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||| | || ||||| || || || | | ||| || || | || Sbjct 988900 TCGAAATCTTCACCACCAAGATGAGTATCACCAGCAGTTGACTGGACCTCGAAAACGCCC 988959 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || ||||| || ||||||||||| || || | | ||| || Sbjct 988960 TCCTCGATGGTGAGGATGGAGACATCGAAAGTACCACCACCAAGATCGTAGACGAGAACC 989019 Query 7577 T-TCGTATCGTC--GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | || ||| | ||| || | |||||| || | ||| || || || || Sbjct 989020 TGGCGCTCCTTCTTGTCGGCGACCTTGTCCAAACCGTAAGCCAGAGCGGCAGCGGTAGGC 989079 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | || ||| ||| ||| || ||||| |||||| | || || || || || Sbjct 989080 TCGTTGACAACACGGAGAACGTTGAGACCAGCGATAGTTCCAGCGTCCTTGGTGGCGGCA 989139 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || | ||||| |||||||| ||||| || || || |||| | | || || ||| Sbjct 989140 CGCTGAGCGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCGTTCTTAACGGGCTCACCA 989199 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || || || || ||||| ||| || ||||| | ||||| ||||| Sbjct 989200 AGGTAGCTCTCAGCAATCTCCTTCATCTTGCCGAGGACCATGGCCGAAATTTCTTC 989255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130513521920