Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq20 217 2e-51 seq27 116 5e-21 seq8 102 1e-16 >seq20 Length=946066 Score = 217 bits (240), Expect = 2e-51 Identities = 571/858 (67%), Gaps = 15/858 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| | ||||| || || | || || ||||| ||||| ||||| | Sbjct 122016 CCACAACATATGCTGATGCGTGTTGCCGTAGGCATACATGGAGAAGACATTGAAAAGGCG 121957 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | || ||||||||| | ||||||| | ||| |||| ||||| | || || ||||| Sbjct 121956 ATTGAAACATACGACTACATGTCCCAGAAGTAC-TTCACACACGCTTCCCCCACACTCTT 121898 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || ||||| || || ||||| ||| |||||||||| | ||||| || Sbjct 121897 CAACGCAGGCACACCTTCGCCTCAGATGTCATCTTGCTTCCTTATTGACATGAAGGAAGA 121838 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || ||||||| ||| || | ||||| | ||||| ||| ||||| Sbjct 121837 CAGCATTGAGGGTATTTACGACACACTTAAGACCTGTGCACTCATCTCCAAGACTGCTGG 121778 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||||| || | | | ||| || | |||| | ||| || | |||| || Sbjct 121777 CGGTATTGGTCTCAATGTGCATCGCATCCGTGCCACT--GGCTCATACATCGGAGGCACT 121720 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 |||||| ||| | ||| | ||||| |||||||| || | ||| ||| || || ||| Sbjct 121719 AATGGTACTTCAAACGGTCTCATTCCTATGCTTCGTGTTTACAACAACACTGCTCGTTAT 121660 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | || | ||| ||| ||| | | || |||| || ||||||||||| Sbjct 121659 GTCGATCAGGGTGGCAACAAGCGCCCGGGTGCATTTGCCATCTACCTCGAGCCATGGCAT 121600 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | | |||||||| |||| || || || | || || | || | Sbjct 121599 GCTGATGTCTTTGGTTTCCTTGACCTGCGCAAGAATCACGGCAAGGAAGAAGTTCGTGCC 121540 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 ||||||||||||| || |||||||| |||||||| ||||||||| | || |||||| Sbjct 121539 CGCGATCTCTTCTATGCCCTCTGGATCCCAGATCTTTTCATGAAGCGTGTCCAGGAGAAC 121480 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || | ||| | | || || || || |||| || || || | || | | || || Sbjct 121479 GGTGAATGGACATTGTTCTGCCCCAACGAGGCCCCTGGCCTTGCTGACGTCTATGGCGAT 121420 Query 112206 GAGTTTGAAGCCCTCTACACAAAG-TACGAGGAAGAAAGTCG-GGCGACTGCGACGGTGC 112263 |||||||||| |||||| || | |||||| || | || ||| | | ||| || | Sbjct 121419 GAGTTTGAAGAGCTCTAC-CATCGTTACGAGCGCGAGGGCCGTGGCCGC-GAGACTGTTC 121362 Query 112264 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| | || | | ||| | || |||||| || |||| || || ||||||| || | Sbjct 121361 GTGCT-CAGAAGCTCTGGTATGCCATTCTCGAGGCTCAGACTGAAACTGGTAACCCCTTC 121303 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| ||||| || ||||| ||| ||||| || || ||||| | ||| ||| Sbjct 121302 ATGCTATACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATCCGC 121243 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 ||||| |||||||| || || || | || | ||| | |||||| ||||| || Sbjct 121242 AGTTCTAACCTCTGCACTGAGATTATTGAGTATACTGCTCCCGATGAGGTTGCTGTCTGC 121183 Query 112443 AACCTCGCATCAATCGCT 112460 ||||| || || ||||| Sbjct 121182 AACCTTGCCTCTCTCGCT 121165 >seq27 Length=812739 Score = 116 bits (128), Expect = 5e-21 Identities = 165/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG-ATACAAAGT 102165 |||||||||||| || | ||||| || || |||||| || ||| | | |||| Sbjct 400936 AACAGTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATCACAGACAAGAA 400877 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | || | ||||| || || | || || || ||| ||||||||||||||| || Sbjct 400876 CTCGA-CTTTTGCCACCCGCCTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTG 400818 Query 102226 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 | ||||| ||| | || | ||||||||||||||| || || ||||| ||||| |||| Sbjct 400817 GCTCCTT-TGCTTCCATCTTTTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTC 400759 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| ||||||||||| ||||| | ||| || ||||| Sbjct 400758 TCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACTGCGACTTTGC 400712 >seq8 Length=981941 Score = 102 bits (112), Expect = 1e-16 Identities = 276/415 (67%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 ||| ||||| ||||| || | |||||| | || | || || | ||||| || | || Sbjct 473468 ATCGAAGCGGCCTGGCCGCATGAGCGCCTTGTCCAAGACGTCCGCTCGATTGGTACCAGC 473409 Query 15947 GATGACAACAATACCTGTTTCGTTATCA--AAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | ||||||| | |||| ||| | ||||| |||||||||||||| | ||| || Sbjct 473408 AAGCACAACAA--CTTGTTCGGTTGTGTTGAAACCGTCCATCTCTGTCAAGATCTGATTC 473351 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA--GCACTGCGTTGCTTTCCCA 16062 | ||| ||| || || || || | ||||||| | |||| ||| | || Sbjct 473350 AGTGTTGCTTCACGCTCGTCGTTACC------ACCACCAAAGTTCTGCTTTGATCGAGCA 473297 Query 16063 CG-------GCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGAC 16114 || ||||| || || || ||||||| ||||| || || | || |||||| Sbjct 473296 CGTCCAATAGCATCGATTTCGTCGATGAAGATAATGCAAGGAGTGCTCTT-GCGAGCATT 473238 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 |||| | ||| || ||||| || || ||||| ||||||||||||||||| | | Sbjct 473237 GGCAAACAAATCTCGCACACGTGATGCACCGACACCGACAAACATCTCCACAAACTCGGA 473178 Query 16175 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 || || | || ||| || || || || || ||| ||||| |||||||| | Sbjct 473177 ACCGCTCACGCT-GAAGAAAGGCACGCCTGACTCTCCAGCAGTGGCTTTTGCGAGAAGGG 473119 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||||| |||||||| || | ||| | ||||| || || ||||| ||||| Sbjct 473118 TCTTACCAGTACCTGGTGGGCCAGAGAGAATAGCACCGCGAGGGATCTTCGCGCC 473064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740165327360