Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq20 241 2e-58 seq27 129 7e-25 >seq20 Length=946066 Score = 241 bits (266), Expect = 2e-58 Identities = 1119/1753 (64%), Gaps = 55/1753 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||| ||||| || || ||||||||| ||||||| | | ||||| |||| | Sbjct 120293 CGGAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAGTG 120352 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | || | || || || ||| | ||||| ||||| ||||| || ||||| Sbjct 120353 ATCTTACCCATGGTGGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATGAAA 120412 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||| ||||| ||||| | ||||||| || || ||||||||||||||| Sbjct 120413 GCACCACGGTCAGCGGCCATCTGGATGATAGTGCGCTGAGAGATCTCCCAGACAGTCTTG 120472 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | || ||| | || || || |||| || ||||| ||||| ||| || Sbjct 120473 TAGAGGTTTTTGGTCTCTTCAGGGATGTTGGGAATTCGCTGAATCGAGCC----GCCCTC 120528 Query 109648 ACCA----TGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAAC 109703 | || || | | |||||| | | ||||||||||| | | ||| || | | Sbjct 120529 AGCAATGATGCGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAG 120588 Query 109704 AAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 || ||| ||||||||| || || || ||||| || || ||||||||| Sbjct 120589 CAGCCATGG--GTTGACCACTTGGAACTCTCCGGCAAGCACACGGCGAGAGTAGATGTTC 120646 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | ||||| || || || || || |||||||| || ||||| | || || || || ||| Sbjct 120647 GATGTGTATGGCTCAAAGCATTCGTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGGC 120706 Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881 ||||| || | ||| || ||| |||| || | | | | ||| || || Sbjct 120707 ATGGGTGCAACGAGTAGGGAGTTGCGGACGCCATGCTGGGCAATCTTCTCCTTCAATGAA 120766 Query 109882 TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACA 109941 |||| || | || || | | || |||| ||| | ||| || || Sbjct 120767 GCCCAGTCCCAGAGATCAGTGGGT---GTGACACC---CCAGAGATCGTACTGGAGCTGG 120820 Query 109942 CCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTC---GGCCAAC 109998 |||| || | || ||||| | | | ||||||||| || || ||| ||| | Sbjct 120821 CCCTGAGATACTGGTGAACCTTGGTATGTCTCGTACGGGCC---AAGCTCTTTGGCAATG 120877 Query 109999 TCG---GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 ||| ||||||| || || || || || || || || || || ||| || | Sbjct 120878 TCGCAAGATGAAGTG---AGAGCAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGC 120934 Query 110056 AGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGCTAGACC 110114 | ||| | | || ||||| || | ||||| | || |||| || ||||| Sbjct 120935 TTCTTTGCCTCGGCTGACTCAAAGGGCAGTCT-CAAAGCGAGGAAAGCATCAGCAAGACC 120993 Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174 || ||||| ||||||||||| | || | |||| ||| || || || || || Sbjct 120994 TTGTACACCAAGACCAATGGGCCTGTGACGGAAGTTACTGCGGCGTGCCTCCTCAACAGG 121053 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATG 110234 || |||| || |||| | ||||||||| || ||| || |||| |||||| Sbjct 121054 ATAGTGGTTGACCTCAATGATCTTATTGAGATTGCGAGTGACAACCTGAGTGACTTCATG 121113 Query 110235 GAGTTTGTCGTAATCGAACGTTTTCGTCTC-CTTATTG---ACATATTTGGGGAGAGCAA 110290 ||||| | | | |||||| ||| | | ||||| | || | || | ||| | Sbjct 121114 AAGTTTCTGGAAGTCGAAC----TCGCCACGCTTATAGTCAACGAAAGATGGCAAAGCGA 121169 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| ||||| ||||| |||| | ||| || | || || || | ||| || || | Sbjct 121170 GAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGC 121229 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 | | ||| ||||| ||| ||| | ||||||||| || || |||||| |||| Sbjct 121230 AGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCAT 121289 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| || |||||| | ||| |||||||||| ||||| | || ||||||||| | ||| | Sbjct 121290 CCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGA 121349 Query 110471 -CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | || | || | ||||| || | | || || |||||| ||| | Sbjct 121350 GCTTCTG-AGCACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATGGTAGAGC 121408 Query 110530 TCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 || ||||| || | || || || |||| ||| || |||| || ||| ||||| | Sbjct 121409 TCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAAT 121468 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 | ||| | || ||||| || | ||||||||| || || || ||||| | || || Sbjct 121469 GTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAG 121528 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 || || || ||| |||| | ||||| | || || || ||| || || | || | Sbjct 121529 AAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCA 121588 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGC-GATGGATCC-----CTTACGACGA 110763 | || ||| | |||||||| ||||| |||| || ||| | || ||| | | Sbjct 121589 AAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTT--GTTG- 121645 Query 110764 CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 || |||| | ||||| || || ||| ||| | || | ||||||||||| | || Sbjct 121646 CCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCG 121705 Query 110824 TCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGC 110883 | || |||||| || || | || || | ||||||| ||| || | || Sbjct 121706 TTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGCACATTG 121765 Query 110884 ATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAAT 110942 | ||||||||| || || ||| || ||||||| ||| | ||||| | ||||| Sbjct 121766 AGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCT-TAAGTGTGTCGTAAAT 121824 Query 110943 ACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGG 111002 ||| ||||| ||| |||| || |||| || |||||||| ||||||||||| ||| Sbjct 121825 ACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGG 121884 Query 111003 CGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGT 111061 || || || ||||||||||| || | || || |||| || | |||||||| | || Sbjct 121885 TGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAA-GTACTTCTGGGACATGTAGT 121943 Query 111062 TGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGA 111121 |||||| || | || | |||| || || || || | |||||| ||||| | Sbjct 121944 CGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCA 122003 Query 111122 ACATATATTGAGG 111134 ||||| ||| || Sbjct 122004 GCATATGTTGTGG 122016 >seq27 Length=812739 Score = 129 bits (142), Expect = 7e-25 Identities = 329/494 (67%), Gaps = 9/494 (2%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| || ||||| || ||||| ||| | || |||||||| ||||| Sbjct 400424 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATG 400483 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 ||||| || || ||| ||||||| | | |||||| ||| |||| || |||| Sbjct 400484 AAGTCGAAGGGGTTTGTGGAGTTGTATACCTTGGTG-TTG-CCAAGAGCCAAGAGCAGAC 400541 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 | || | |||| |||| || || | | |||| | | ||||| || | ||| || Sbjct 400542 GGTCAGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGAGCAC 400601 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 | || ||||| ||| | ||| | || ||||||||||||||| || | | ||| | | Sbjct 400602 AGGGAAGAGCCTCGGTAAGGAACTCCTGCTCGATCTCCACAGCCTCAGTGATGATAGCCT 400661 Query 119446 GAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTT 119505 | | || | || ||| | | |||| || | | ||||| || Sbjct 400662 TGACGGCATCCTTGCTGGGGCGGTTGTTGAGGAGTGAGAAGAGCAAGCAAGCAAAGTCGC 400721 Query 119506 GATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTC 119565 || | || ||||| |||||||||||||| || |||| || || ||||| || | Sbjct 400722 AGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGC 400781 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 | | ||||| ||||||||||||| | ||| ||| |||||||| ||||| ||| Sbjct 400782 CACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAGAAGATACCCTCGACAG 400841 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGA 119681 ||||| || | || || |||||| |||||| |||||| || ||| ||| Sbjct 400842 CAGCGAAGGCAACAAGGCGGGTGGCAAAA-GTCGAGTTCTTGTCTGTGATCCATCGCAGA 400900 Query 119682 GCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 400901 GCCCAGTCGGCCTT 400914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973879686400