Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq20 309 4e-79 seq8 89.7 6e-13 >seq20 Length=946066 Score = 309 bits (342), Expect = 4e-79 Identities = 1136/1752 (65%), Gaps = 39/1752 (2%) Strand=Plus/Plus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| ||| |||||||||||||| ||||||||||| || | ||||| | | ||| Sbjct 120284 GCCATAGTACGGAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGC 120343 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 || |||| || ||| ||| || || | |||| | |||| | || |||| Sbjct 120344 ATGGAAGTGATCTTACCCATGGTGGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGG 120403 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCAC 105760 |||||||| |||||| | || ||||| | |||| | | ||| ||||| Sbjct 120404 TCAATGAAAGCACCACGGTCAGCGGCCATCTGGATGATAGTGCGCTGAGAGATCTCCCAG 120463 Query 105761 ACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTT--TGAATTGAAC 105818 || || |||||| || ||| | || || ||||| | || || ||| ||||| || | Sbjct 120464 ACAGTCTTGTAGAGGTTTTTGGTCTCTTCAGGGATGT-TGGGA-ATTCGCTGAATCGAGC 120521 Query 105819 CCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGAT 105878 | ||| | | ||| | | |||||| | || ||||| ||||| || | ||| | Sbjct 120522 CGCCCTCAGCAATGATGCGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGT 120581 Query 105879 CATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-T 105935 | |||| || ||| |||||| | |||||||| || || | | ||| | Sbjct 120582 CCTTGAGCAGCCATGG--GTTGACCACTTGGAACTCTCCGGCAAGCACACGGCG-AGAGT 120638 Query 105936 AGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGG 105995 ||||||||| ||||| || ||||||||||| || || || | ||||| | || |||| Sbjct 120639 AGATGTTCGATGTGTATGGCTCAAAGCATTCGTTGTTGCCGAGAATTTGAGATGTTGAGG 120698 Query 105996 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCT 106055 | || ||||| ||||| | | || ||| || | || | | || |||| Sbjct 120699 CAGTAGGCATGGGTGCAACGAGTAGGGAGTTGCGGACGCCATGCTGGGCAATCTTCTCCT 120758 Query 106056 TGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAG 106113 | | | ||||||| || || | | ||| | || |||| | ||| | || || Sbjct 120759 TCAATGAAGCCCAGTCCCAGA-GATCAGTGGGTGTGACAC-CCCAGAGATCGTACTGGAG 120816 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAA 106173 | || || || || ||||| | ||||||| || | || | ||| || | Sbjct 120817 CTGGCCCTGAGATACTGGTGAACCTTGGTATGTCTCGTACGGGCCAAGCTCTTTGGCAAT 120876 Query 106174 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 106233 || || | || | ||||| || |||||||| ||||| || || | || Sbjct 120877 GTCGCAAGATGAAGTGAGAGCAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGCTT 120936 Query 106234 CTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACC 106290 ||| || || |||| ||||| | | || | |||| | || |||| || ||||| Sbjct 120937 CTTTGCCTCGGCTGACTCAAAGG-GCAGT--CTCAAAGCGAGGAAAGCATCAGCAAGACC 120993 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 106350 ||| ||||| | |||||| || ||||| || | ||| || || |||||| || Sbjct 120994 TTGTACACCAAGACCAATGGGCCTGTGACGGAAGTTACTGCGGCGTGCCTCCTCAACAGG 121053 Query 106351 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 106410 ||| || ||||||| || ||||| || |||| || |||| |||||| Sbjct 121054 ATAGTGGTTGACCTCAATGATCTTATTGAGATTGCGAGTGACAACCTGAGTGACTTCATG 121113 Query 106411 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 106470 |||||| | | || || || | || | | || | ||| | |||| || Sbjct 121114 AAGTTTCTGGAAGTCGAACTCGCCACGCTTATAGTCAACGAAAGATGGCAAAGCGAGAGA 121173 Query 106471 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAA 106530 || | ||||| ||||| |||||| | | || ||||| | ||| || || || | Sbjct 121174 GGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAG 121233 Query 106531 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTT 106590 ||| ||||| || || || | ||||| ||||| ||||| ||||||| |||||||| Sbjct 121234 GTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 121293 Query 106591 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CAT 106649 ||| |||||| |||| | || || || ||||| | || |||||| || | ||| | | | Sbjct 121294 GTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAGCTT 121353 Query 106650 CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTA-CTTTGTGTAGAGGGCT 106708 | | | | | ||| | || | | || ||||| |||||| | || |||||| || Sbjct 121354 CTGAG-CACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATG-GTAGAGCTCT 121411 Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768 |||||||| || || |||| | || || || |||| || || ||||| | | | Sbjct 121412 TCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTC 121471 Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828 |||| ||| ||||| || |||||||||||||| ||||| ||||| |||| | ||| Sbjct 121472 CATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGAAG 121531 Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888 ||||| | ||| | ||||| | || || || || | |||||||| | | | Sbjct 121532 AGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAG 121591 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 106942 | ||| || ||||||||||| || |||| || | | ||| | ||| ||| Sbjct 121592 ACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCC---GGGCGCTTGTTGCCA 121648 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 | |||| ||||| || || ||| ||| | || |||||||| ||||| | ||| | | Sbjct 121649 CCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTT 121708 Query 107003 GATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060 || |||||| || || |||| || ||| | |||| | | ||| | | | Sbjct 121709 GAAGTACCATTAGTGCCTCCGATGTATGAG--CCAGTGGCACGGATGCGATGCACATTGA 121766 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 |||||||| ||||| ||| ||||| | ||||| | |||| || | || |||| Sbjct 121767 GACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATAC 121826 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || ||| ||||| || | |||||||||||| |||||||| || |||| Sbjct 121827 CCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTG 121886 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239 | || || |||||||| || || | ||||| |||| ||| | |||||||| | |||| Sbjct 121887 TGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAA-GTACTTCTGGGACATGTAGTCG 121945 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 ||||| || | | ||||||||||| || || ||||| | ||| |||||||| | | Sbjct 121946 TATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCAGC 122005 Query 107300 ATGTATTGGGGT 107311 || | ||| ||| Sbjct 122006 ATATGTTGTGGT 122017 >seq8 Length=981941 Score = 89.7 bits (98), Expect = 6e-13 Identities = 273/415 (66%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||| ||||| ||||| || | |||||| | || | || || | ||||| || | || Sbjct 473468 ATCGAAGCGGCCTGGCCGCATGAGCGCCTTGTCCAAGACGTCCGCTCGATTGGTACCAGC 473409 Query 9254 GATGACAACAATACCTGTTTCATTATCA--AAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | ||||||| | |||| || | ||||| |||||||||||||| | || || Sbjct 473408 AAGCACAACAA--CTTGTTCGGTTGTGTTGAAACCGTCCATCTCTGTCAAGATCTGATTC 473351 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA--GCACTGCGTTGCTTTCCCA 9369 | ||| ||| || || || || | ||||||| | |||| ||| | || Sbjct 473350 AGTGTTGCTTCACGCTCGTCGTTACC------ACCACCAAAGTTCTGCTTTGATCGAGCA 473297 Query 9370 CG-------GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGAT 9421 || ||||| || || || ||||||| ||| || || || | || ||| || | Sbjct 473296 CGTCCAATAGCATCGATTTCGTCGATGAAGATAATGCAAGGAGTGCTCTT-GCGAGCATT 473238 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 |||| | ||| || || | | || || ||||| ||||||||||||||||| | | Sbjct 473237 GGCAAACAAATCTCGCACACGTGATGCACCGACACCGACAAACATCTCCACAAACTCGGA 473178 Query 9482 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 || || | || ||| || || || || || ||| ||||| |||||||| | Sbjct 473177 ACCGCTCACGCT-GAAGAAAGGCACGCCTGACTCTCCAGCAGTGGCTTTTGCGAGAAGGG 473119 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||||| |||||||| || | ||| | ||||| || || ||||| ||||| Sbjct 473118 TCTTACCAGTACCTGGTGGGCCAGAGAGAATAGCACCGCGAGGGATCTTCGCGCC 473064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978676069120