Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq22 116 4e-21 >seq22 Length=685860 Score = 116 bits (128), Expect = 4e-21 Identities = 272/410 (66%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 || ||||| || | ||| || ||||| || || || |||||||| | ||||| || ||| Sbjct 321892 TGCTTGATTCCCGTGTCCGCTCATGGCACCAACCCCGCTAGTGCCGCTATGGCTGGCATG 321951 Query 154779 AAAGTTGTAGGTGTCAAGTGTGATGATGAT---GGTAACATAGACATCAAAGATCTAGAG 154835 || || | ||||||||||||| | || || | || || |||||||| || Sbjct 321952 CGTGTAGTTGCTGTCAAGTGTGATACCGCAACCGGCAATCTGGATATTGAAGATCTAAAG 322011 Query 154836 AAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACA 154895 |||| | | | | || || | |||||||| ||||||||| || Sbjct 322012 GCGAAATGTGAGAAGCACAGCGAAGAGCTCGCTGCCATTATGATCACATACCCAAGCACG 322071 Query 154896 CATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGT 154955 || ||||| || | || | | | || |||| | | ||||| | | ||||| Sbjct 322072 TTCGGCGTATTCGAGCCCAAGGTCAAAGAGGCATGTGATTTGATTCATCAGCACGGTGGC 322131 Query 154956 CAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAG 155015 || || ||| | || || ||||| | || ||||| | || || ||| ||||| Sbjct 322132 CAAGTTTATATGGACGGTGCAAACATGAACGCACAAATTGGTCTCTGCTCACCCGGTGAG 322191 Query 155016 TATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGT 155075 || || ||||| || ||||| ||| | || || |||||||||||||| || || ||| Sbjct 322192 ATCGGCGCTGATGTGTGCCATCTCAACCTTCACAAGACATTCTGTATTCCTCACGGTGGT 322251 Query 155076 GGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATT 155125 || ||||| || || || ||||| |||||| ||||||||||||| || Sbjct 322252 GGTGGTCCAGGTGTTGGCCCTATCGGTGTAAAGGAACATCTCACACCTTT 322301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579210714833920