Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq82 178 3e-39 seq52 100 6e-16 >seq82 Length=92890 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||| || || ||||| |||| ||||| | |||||||| |||||| Sbjct 12974 TGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGC 13033 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| || || ||||||||||||||||| ||||| ||||||||||| || Sbjct 13034 TTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 13093 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || || |||||||| |||||| || ||||||| ||||| || ||| Sbjct 13094 GACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTC 13153 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | |||||| Sbjct 13154 AGAGTCTTGACGAAAATTTGCAT 13176 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || || || ||||| || | || || | || |||||| Sbjct 13196 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGGCCGTCTTCG 13255 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | ||||| ||||| |||||||||||||| || || || Sbjct 13256 AGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGG 13315 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||| || || ||| ||||| || || | ||||| Sbjct 13316 ATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTGATGGTCTTG 13375 Query 195112 CCTGTCA 195118 || |||| Sbjct 13376 CCGGTCA 13382 Score = 134 bits (148), Expect = 3e-26 Identities = 143/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 |||||||| |||||||| || ||||| || ||||| |||| |||| || | |||||||| Sbjct 13486 ACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTC 13544 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| | || || ||||||||||| ||||| || || || || Sbjct 13545 GAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTG 13604 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| || || ||||| |||||| || || || ||||| | ||||| Sbjct 13605 GATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACCTCGAGGGTGATGGTCTT 13664 Query 195111 TCCTGT 195116 || || Sbjct 13665 GCCGGT 13670 Score = 109 bits (120), Expect = 1e-18 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| ||||| ||||| |||| ||| |||| || || || | ||||||||| Sbjct 12752 GTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCCTCCAACTGCTTACCA 12811 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || ||||| ||||| || || || || || || || || ||| Sbjct 12812 GCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTT 12871 Query 195064 ACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || || || || ||||| ||| || ||||| | || | |||||||| |||| Sbjct 12872 ACATTGTCGATTGTGTCGCTCGA---CTCAACTTCCAATGTGATGGTCTTTCCAGTCAGT 12928 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 12929 GTCTTGACGAAGATCTGCAT 12948 >seq52 Length=336907 Score = 100 bits (110), Expect = 6e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| || || || ||||| |||| ||||| | ||||| |||||||| Sbjct 188384 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGCTG 188443 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || ||||| || || |||||||| || ||||| ||||| || Sbjct 188444 CTTGCCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTT 188503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477506012896