Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq82 100 2e-16 >seq82 Length=92890 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | |||| |||||||||||||| ||||| ||||| |||| | || ||| Sbjct 12740 ACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCCTCC 12799 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || || || || || || |||||||| | || | |||||||| || Sbjct 12800 AACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGG 12859 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || || | ||||| || | | |||||| || | || ||||| Sbjct 12860 ATCTTGGACTTTAC--AT--TGTCGATTGTGTCGCTCGACTCAACTTCCAATGTGATGGT 12915 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || || ||||| || |||||||||||| Sbjct 12916 CTTTCCAGTCAGTGTCTTGACGAAGATCTGCATA 12949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632460536064