Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq20 105 8e-18 >seq20 Length=946066 Score = 105 bits (116), Expect = 8e-18 Identities = 400/621 (64%), Gaps = 10/621 (2%) Strand=Plus/Plus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 ||||| ||||| ||||| || | | | | ||||| || || || || | ||||| | Sbjct 121412 TCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTC 121471 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AA 48244 || || | | | | || | |||| || | |||||| ||||| || || ||| || Sbjct 121472 CATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGC-ATAGAA 121530 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | | | | |||||| ||||| |||| | || ||||| || | | Sbjct 121531 GAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAA 121590 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||||||||||||||| || | || || || | | |||| || || || || || || Sbjct 121591 GACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTTGTTGCCACC 121650 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||| | ||| | ||||| ||||| ||||| | | ||| || | | ||| ||||| Sbjct 121651 CTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGA 121710 Query 48425 TATACCATTGGTTC--CCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAA 48480 ||||||| || | |||| ||| | ||| | || | || | | |||| | Sbjct 121711 AGTACCATTAGTGCCTCCGATGTATGA--GCCAGTGGCACGGATGCGATGCACATTG--A 121766 Query 48481 TACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTC 48540 ||| ||||| || || | || || || || ||||| ||||| || || ||||| | Sbjct 121767 GACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATAC 121826 Query 48541 CTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAG 48600 | || || || || || |||| | | || || ||| ||||| || || | | Sbjct 121827 CCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTG 121886 Query 48601 TTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTAT 48660 | |||| || || | ||| || || || || | || | |||| || | | | | Sbjct 121887 TGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACATGTAGTCGT 121946 Query 48661 ATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACA 48720 |||||||||| | || || || | |||||| |||| | |||||||| | || Sbjct 121947 ATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCAGCA 122006 Query 48721 TATATTGAGGTCTTTCAACAA 48741 ||| ||| |||| ||| ||| Sbjct 122007 TATGTTGTGGTCGCTCAGCAA 122027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106776408320