Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq59 96.9 3e-15 seq52 91.5 1e-13 seq82 86.0 5e-12 >seq59 Length=254989 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || ||||||||||| ||| | || | || ||| Sbjct 239626 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCC 239685 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||||||| ||||| || || || |||||||| || | ||||| |||||||||||| Sbjct 239686 AACTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATGCCCTCCTTGTC 239741 >seq52 Length=336907 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 188361 CCGCCACGGAGACGGAGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 188420 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | |||||| || ||||| ||||| ||||||||||||| |||| Sbjct 188421 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCCGGGGGA 188480 Query 48660 ACGCCCTCCTTGTCGCTAATCTT 48682 | |||||||||||| |||||| Sbjct 188481 ATGCCCTCCTTGTCCTGAATCTT 188503 >seq82 Length=92890 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || | ||| |||||| ||||| ||||| || || Sbjct 12722 CCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAA 12781 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| |||||||||||||| || || || || ||||| || || | || Sbjct 12782 AGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGG 12841 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||||| |||||| | | | || || ||| || Sbjct 12842 ATACCCTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACT 12901 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| |||| || || || || |||||||| Sbjct 12902 TCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936262909024