Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq27 210 4e-49 seq20 156 8e-33 >seq27 Length=812739 Score = 210 bits (232), Expect = 4e-49 Identities = 363/520 (70%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| || | | |||||||||||| Sbjct 400420 CTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTC 400479 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA---G 47955 ||||||| ||||||||| | | ||| || ||| || ||| | | ||| | Sbjct 400480 CATGAAGTCGAAGGGGTTTGTGGAGTTGTATACCTTGGTGTTGCCAA---GAGCCAAGAG 400536 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 ||| | || ||||| |||| ||||| | |||||||| || ||||||||| | || Sbjct 400537 CAGACGGTCAGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAG 400596 Query 48016 GGACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | ||| || || ||||| || || ||||||| ||| |||| ||| || || | | Sbjct 400597 AG-CACAGGGAAGAGCCTCGGTAAGGAACTCCTGCTCGATCTCCACAGCCTCAGTGATGA 400655 Query 48075 TCTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 | ||| ||| || ||| || | |||||| | || || | |||||| || Sbjct 400656 TAGCCTTGACGGCATCCTTGCTGGGGCGGTTGTTGAGGAG-----TGAGA-AGAGCAAGC 400709 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | |||||||| | ||||| ||| || || || ||||||| ||||||||||| |||| Sbjct 400710 AAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGAC 400769 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||| | || | || |||||||| || || | || || |||||| |||||||| Sbjct 400770 CGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAGAAGA 400829 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || ||||| || || | | |||| | ||||||||||| || Sbjct 400830 TACCCTCGACAGCAGCGAAGGCAACAAGGCGGGTGGCAAAAGTCGAGTTCTTGTCTGTGA 400889 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||| || |||||||| |||||||| ||||||||| Sbjct 400890 TCCATCGCAGAGCCCAGTCGGCCTTCTTGCGGATGCATGG 400929 >seq20 Length=946066 Score = 156 bits (172), Expect = 8e-33 Identities = 830/1303 (64%), Gaps = 47/1303 (4%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||||| ||||| |||||| ||||| | | | |||||||||||| | |||||| Sbjct 120385 GTTCAAAGACTGGGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTGGATGATAGT 120444 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||| |||| |||||| || |||||| ||| | |||| || || |||| | ||| Sbjct 120445 GCGCTGAGAGATCTCCCAGACAGTCTTGTAGAGGTTTTTGGTCTCTTCAGGGATGTTGGG 120504 Query 212816 GATGTTCTGCACAGACCC--CCTGTGTA-TGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 || ||| | || || ||| | | || | | | | ||||| ||| ||| Sbjct 120505 AATTCGCTGAATCGAGCCGCCCTCAGCAATGATGCGGTTCTT---CATGTTCTCAGACCA 120561 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 ||| ||| || | ||| ||||| ||| |||||||| | ||||| || || | Sbjct 120562 GAGACCCATGTCGACGAGGTCCTTGAGCAGCCATGGGTTGACCACTTGGAACTCTCCGGC 120621 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | ||| || ||||| ||||| | || |||||||| || || Sbjct 120622 AAGCACACGGCGAGAGTAGATGTTCGATGTGTATGGCTCAAAGCATTCGTTGTTGCCGAG 120681 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 ||| || | || ||| || |||||||| || || || || ||| | || || || Sbjct 120682 AATTTGAGATGTTGAGGCAGTAGGCATGGGTGCAACGAGTAGGGAGTTGCGGACGCCATG 120741 Query 213053 CTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTT 213112 || | | || | | ||||||||||| ||| ||| | Sbjct 120742 CTGGGCAATCTTCTCCTTCAATGAAGCCCAGTCCCAGAGATCAGTG-GGTG--------T 120792 Query 213113 CACGTTCCACATGTCAAACTGCAAGATG--CCTTTGCTCACGGGGCTGCCCTGGTAAGAG 213170 || ||| | || |||| | | || ||| | | || || || ||||| | Sbjct 120793 GACACCCCAGAGATCGTACTGGA-GCTGGCCCTGAGAT-ACTGGTGAACCTTGGTATGTC 120850 Query 213171 GAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATG 213230 ||| |||||| |||| ||||| | ||||| || | || ||||||| ||| ||| Sbjct 120851 TCGTACGGGCCAAGCTCTTTGGCAATGTCGCAAGATGAAGTGAGAGCAGCGTGGTAAATG 120910 Query 213231 GTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCA-TCATCAT 213289 ||||| || |||| ||||||||||||| ||||| | ||| ||||||| || | Sbjct 120911 GTTTCGAAGATCTGAATGTTGAGCTTCTTTGCCTCGGCTGACTCAAAGGGCAGTCTCAAA 120970 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 ||| |||| ||||||| || || || || || | || ||||| ||||| | | ||| Sbjct 120971 GCG-AGGAAAGCATCAGCAAGACCTTGTACACCAAGACCAATGGGCCTGTGACGGAAGTT 121029 Query 213350 A-GACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGC 213408 | | | || |||||| | || || |||| || |||||||| ||||| |||| Sbjct 121030 ACTGCGGCGTGC-CTCCTCAACAGGATAGTGGTTGACCTCAATGATCTTATTGAGATTGC 121088 Query 213409 GGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCT 213468 | ||| | || | ||||| | || | || | | |||| || | | | | Sbjct 121089 GAGTGACAACCTGAGTGACTTCATGAAGTTTCTGGAAGTCGAACTCGCCACGCTTATAGT 121148 Query 213469 GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCT 213527 || || |||| |||| ||| |||||||| || || ||||| | | ||| | Sbjct 121149 CAACGAAAGATGGCAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAG-CA 121207 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| || ||||| ||||| ||||| | |||||||| || ||||||| ||| Sbjct 121208 GTATACTCAATAATCTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGG 121267 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| | ||||||||| |||||| ||||| || || || ||| Sbjct 121268 TTGCTCTTCCTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGA 121327 Query 213648 GACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGG 213705 | | | || | |||| |||||| | | || || | | | || | || ||| Sbjct 121328 GCCTCGAGAA--TGGCATACCAGAGCTTCTGAGC----ACGAACAGTCTCGCGGCCACGG 121381 Query 213706 GCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGT 213764 | | || |||||| | | ||||||||| | || || | ||| |||| || ||| Sbjct 121382 CCCTCGCGCTCGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGAC---GT-CAG- 121436 Query 213765 CCCGGACAGGATGC-----GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCT 213819 | || |||| | ||| || | | |||| || |||| || ||| | || Sbjct 121437 CAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCT 121496 Query 213820 GCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCA 213879 |||||| || || |||| ||| || || ||| || || | || | || ||| Sbjct 121497 TCATGAAAAGATCTGGGATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTTCTTCCT 121556 Query 213880 CTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGT 213939 || || |||||||| || || || |||||| || || ||||| ||||| | || Sbjct 121557 TGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGT 121616 Query 213940 AGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCAC 213979 |||||||||| || |||| || | ||||| ||||| || || Sbjct 121617 AGATGGCAAATGCACCCGGGCGCTTGTTGCCACCCTGATCGAC 121659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529446481920