Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq27 197 3e-45 seq20 129 1e-24 >seq27 Length=812739 Score = 197 bits (218), Expect = 3e-45 Identities = 330/480 (69%), Gaps = 11/480 (2%) Strand=Plus/Minus Query 25846 TGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGA 25904 ||||||| ||| || || | | || |||| | || || || ||||| |||||||| || Sbjct 400893 TGGATCA-CAGACAAGAACTCGACTTTTGCCACCCGCCTTGTTGCCTTCGCTGCTGTCGA 400835 Query 25905 GGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCAT 25964 ||| ||||| ||||| || || ||||| ||||||| ||||||||| || || || Sbjct 400834 GGGTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTTTGGCTCAAGAAGCGTGGCCTGAT 400775 Query 25965 GCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTT 26024 |||||| ||| ||| ||||||||||||||| | || ||||| | ||| | || || Sbjct 400774 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACTGCGACTT 400715 Query 26025 TGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACCTTCTCAA-GAGACCGTCTA 26081 ||| ||| |||||| | ||| | ||| |||| || ||| || ||||| | Sbjct 400714 TGCTTGCTTGCTCTTC-----TCAC-TCCTCAACAACCGCCCCAGCAAGGATGCCGTCAA 400661 Query 26082 CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNN 26141 |||||||| |||||||||||||||||| ||||||| | Sbjct 400660 GGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCCCTG 400601 Query 26142 NNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCA 26201 ||||||||||| || |||||| |||| |||||||||| ||| || |||| Sbjct 400600 TGCTCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCG 400541 Query 26202 TCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTAT 26261 |||||| | || || | ||| | |||| | | ||||| |||||||| || Sbjct 400540 TCTGCTCTTGGCTCTTGGCAACACCAAGGTATACAACTCCACAAACCCCTTCGACTTCAT 400481 Query 26262 GGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| ||||| ||| | | || ||||||||||||||||| ||| | ||||| ||||| || Sbjct 400480 GGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCA 400421 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/223 (71%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 25489 TACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATG 25548 ||||||||||| || || ||||||||| |||||||||||||| ||||||| | Sbjct 401302 TACAAGAAGGCCGAAGCTTCCTTCTGGACCGCAGAAGAGATTGATCTCTCCAAGGATCTT 401243 Query 25549 GACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTACGTGTTGGC 25604 ||| |||| || || || | ||||||| || | ||| || |||| | || Sbjct 401242 CACGACTGGAACAAGCGCCTGAATGATGACGAGC-GCTTCTTCATCTCCCACGTCCTCGC 401184 Query 25605 ATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGA 25664 ||||| || ||||| ||||| || || |||||||| || |||| ||||| |||| || Sbjct 401183 TTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGATTCTCCAGCGA 401124 Query 25665 AGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | | ||| | || | | || |||||||| |||||||| Sbjct 401123 GGTCCAAATACCCGAAGCACGA-TGCTTCTACGGCTTCCAGAT 401082 >seq20 Length=946066 Score = 129 bits (142), Expect = 1e-24 Identities = 684/1076 (64%), Gaps = 41/1076 (4%) Strand=Plus/Plus Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465 ||||||| || || ||||||||||| ||||| || |||||| ||||||| ||| Sbjct 120879 CGCAAGATGAAGTGAGAGCAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGCTTCT 120938 Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTG 221523 | ||||||| || ||||||| | || | | ||||| | || || || || || Sbjct 120939 TTGCCTCGGCTGACTCAAAGGGCAGTCTCAA-AGCGAGGAAAG-CATCAGCAAGACCTTG 120996 Query 221524 TACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGAT 221582 ||| || | ||| ||||||||||| | ||| ||||| || || || |||| Sbjct 120997 TACACCAAGACCAATGGGCCTGTGACGGAAGTTACT-GCGGCGTGCCTCCTCAACAGGAT 121055 Query 221583 AAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA 221642 | |||||| || || | || ||||| || |||||| || | | || || | Sbjct 121056 AGTGGTTGACCTCAATGATCTTATTGAGATTGCGAGTGACAACCTGAGTGACTTCATGAA 121115 Query 221643 GCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTA 221702 | |||||| || | |||||||| | | | | || || |||| | Sbjct 121116 GTTTCTGG------AAGTCGAACTCGCCACGCTTATAG------TCAACGAAAG-----A 121158 Query 221703 GGGCAACGCT-----GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757 ||||| || ||| ||||| || || || ||||| || ||||||| || Sbjct 121159 TGGCAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAAT 121218 Query 221758 GATCTCTGTACAGAGGTTGCTGCACTT--GATGGTCCCCAGGTGATTGTGATTAGACTTG 221815 ||||| || |||||||| | ||| |||||| || |||| || || || ||| Sbjct 121219 AATCTCAGTGCAGAGGTTA--GAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTC 121276 Query 221816 CGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGA 221875 | ||| || |||||||| ||||| ||||| ||||| || ||||||| | ||| Sbjct 121277 CTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGA 121336 Query 221876 ATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTT 221933 || | |||||| | |||| || | || ||| || | | | |||||| || Sbjct 121337 ATGGCATACCAGAGCT-TCTGAGCACGAACAGTC-TCGCGGCCACGGCCCTCGCGCT--- 121391 Query 221934 CATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACC 221993 | || | |||||| ||||||| || || || | || | ||||| || | Sbjct 121392 CGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCT 121451 Query 221994 TGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCG 222053 | ||| || | || |||| | ||| || | ||| | || |||||| || || | Sbjct 121452 CGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTG 121511 Query 222054 GGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCC 222113 ||||||| || || | |||||||| | || || || ||| ||||| || || | Sbjct 121512 GGATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGC 121571 Query 222114 TCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGC 222173 ||| || | || |||| | ||||| ||||| ||||| || |||| ||| | || | Sbjct 121572 GCAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCAC 121631 Query 222174 CGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGG 222232 | || |||||||||||||||||||| | ||| ||| | |||| | | ||||| Sbjct 121632 CCGGGCGCTTGTTGCCACCCTGATCGA-CATAACGAGCAGTGTTGTTGTAAACACGAAGC 121690 Query 222233 GTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTC 222292 | || | || ||||| || ||| || ||||| ||||| | || ||| | Sbjct 121691 ATAGGAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGG 121750 Query 222293 AGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTG 222352 | | | || | || ||||| || || || ||||| | || ||| |||| Sbjct 121751 ATGCGATGCACATTGAGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTA 121810 Query 222353 AGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGAC 222412 || ||||| || ||||| || ||| ||||| | || | || || ||||| ||| Sbjct 121811 AGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGAC 121870 Query 222413 ATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 ||||||| | | | ||||| || || ||||| |||||||| ||||| Sbjct 121871 ATCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTA 121926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841456158720