Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq22 127 2e-24 >seq22 Length=685860 Score = 127 bits (140), Expect = 2e-24 Identities = 272/406 (67%), Gaps = 3/406 (1%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 || ||||||||||||| |||||| ||||| || || || ||||| ||||| || || Sbjct 322301 AAAGGTGTGAGATGTTCCTTTACACCGATAGGGCCAACACCTGGACCACCACCACCGTGA 322242 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 ||||||||||||||||| || | || ||||| || ||||| || || |||| ||| Sbjct 322241 GGAATACAGAATGTCTTGTGAAGGTTGAGATGGCACACATCAGCGCCGATCTCACCGGGT 322182 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 ||||| | ||||| || | |||||||| || | ||| || || ||||| | Sbjct 322181 GAGCAGAGACCAATTTGTGCGTTCATGTTTGCACCGTCCATATAAACTTGGCCACCGTGC 322122 Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401 | ||||| | | |||| || | ||| || | || ||||| || || ||| Sbjct 322121 TGATGAATCAAATCACATGCCTCTTTGACCTTGGGCTCGAATACGCCGAACGTGCTTGGG 322062 Query 138402 TATGTAATCATAATACATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCT 138461 ||||| |||||||| | ||| || | | | | |||| || ||||||| Sbjct 322061 TATGTGATCATAATGGCAGCGAGCTCTTCGCTGTGCTTCTCACATTTCGCCTTTAGATCT 322002 Query 138462 TTGATGTCTATGTTGCC---ATCATCATCACACTTGACACCTACAACTTTCATTCCTGCC 138518 | || || | ||||| | ||||||||||||| | || || ||| || ||| Sbjct 322001 TCAATATCCAGATTGCCGGTTGCGGTATCACACTTGACAGCAACTACACGCATGCCAGCC 321942 Query 138519 ATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCA 138564 || | |||||||| || || || ||||| || ||| | || |||| Sbjct 321941 ATAGCGGCACTAGCGGGGTTGGTGCCATGAGCGGACACGGGAATCA 321896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578996315605760