Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq20 311 1e-79 seq8 84.2 3e-11 >seq20 Length=946066 Score = 311 bits (344), Expect = 1e-79 Identities = 1130/1741 (65%), Gaps = 37/1741 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 ||||| | ||| | ||||| || || | ||||| || || ||||||||||| | Sbjct 122016 CCACAACATATGCTGATGCGTGTTGCCGTAGGCATACATGGAGAAGACATTGAAAAGGCG 121957 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | || ||||||||| | |||||||| | ||| |||| ||||| | || || ||||| Sbjct 121956 ATTGAAACATACGACTACATGTCCCAGAAGTAC-TTCACACACGCTTCCCCCACACTCTT 121898 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || ||||| || |||||||| |||||||||||| | || ||||| || Sbjct 121897 CAACGCAGGCACACCTTCGCCTCAGATGTCATCTTGCTTCCTTATTGACATGAAGGAAGA 121838 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | ||||| || | || |||| | ||||| | ||||| ||| ||||| Sbjct 121837 CAGCATTGAGGGTATTTACGACACACTTAAGACCTGTGCACTCATCTCCAAGACTGCTGG 121778 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 75508 |||||||| | | | ||| | | |||| | ||| || |||| || || Sbjct 121777 CGGTATTGGTCTCAATGTGCATCGCATCCGTGCCACTGG--CTCATACATCGGAGGCACT 121720 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 |||||| ||| | ||| | ||||| |||||||| || | ||| ||| || || ||| Sbjct 121719 AATGGTACTTCAAACGGTCTCATTCCTATGCTTCGTGTTTACAACAACACTGCTCGTTAT 121660 Query 75569 GTAAATCAAGCGGGGCGTCGCAAG-----GGGTCCATC-GCGGTCTACTTGGAACCATGG 75622 || |||| | | ||| | ||| |||| ||| || ||||| | || |||||| Sbjct 121659 GTCGATCAGG-GTGGCAAC--AAGCGCCCGGGTGCATTTGCCATCTACCTCGAGCCATGG 121603 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 ||||| ||| || | | |||||||| | || || || || | ||||| | ||| Sbjct 121602 CATGCTGATGTCTTTGGTTTCCTTGACCTGCGCAAGAATCACGGCAAGGAAGAAGTTCGT 121543 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | |||||||| | |||| ||||| ||||| |||||||||||||| || ||||| Sbjct 121542 GCCCGCGATCTCTTCTATGCCCTCTGGATCCCAGATCTTTTCATGAAGCGTGTCCAGGAG 121483 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 ||| ||||| | | ||||| || || |||| || || || | |||| || Sbjct 121482 AACGGTGAATGGACATTGTTCTGCCCCAACGAGGCCCCTGGCCTTGCTGACGTCTATGGC 121423 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAG-TATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 || |||||||||| |||||| || | || || ||||| | | | | |||||| Sbjct 121422 GATGAGTTTGAAGAGCTCTAC-CATCGTTACGAGCGCGAGGGCCGTGGCCGCGAGACTGT 121364 Query 75862 ACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | | | | || | | ||| | || |||||| | | ||||| || ||||| | || | Sbjct 121363 TCGTG-CTCAGAAGCTCTGGTATGCCATTCTCGAGGCTCAGACTGAAACTGGTAACCCCT 121305 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 ||||| ||||||||||| || |||| |||||| ||||| ||||| | || || ||| Sbjct 121304 TCATGCTATACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATCC 121245 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || || || || ||||| || ||| | ||||| || | | |||||| ||||| | Sbjct 121244 GCAGTTCTAACCTCTGCACTGAGATTATTGAGTATACTGCTCCCGATGAGGTTGCTGTCT 121185 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 |||| | || || |||| | ||| | || | | || | || || || | Sbjct 121184 GCAACCTTGCCTCTCTCGCTTTGCCATCTTTCGTTGACTATAAGCGTGGCGAGTTCGACT 121125 Query 76101 ATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACA 76160 | |||||||||||| |||| || |||| || ||||| || ||||||| Sbjct 121124 TCCAGAAACTTCATGAAGTCACTCAGGTTGTCACTCGCAATCTCAATAAGATCATTGAGG 121065 Query 76161 GAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTT 76220 || ||||| |||||| || || ||| | || ||||| || |||||| Sbjct 121064 TCAACCACTATCCTGTTGAGGAGGCACGCCGCAGTAACTTCCGTCACAGGCCCATTGGTC 121005 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTAT---TTTGTGCCGCTACGCATTTGATTCAG 76277 | ||||| |||||||| || |||| || | |||| | || | | ||||| |||| Sbjct 121004 TTGGTGTACAAGGTCTTGCTGATGCTTTCCTCGCTTTGAG--ACTGC-CCTTTGAGTCAG 120948 Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337 || || ||| || | || || ||||| |||||||| || ||||| | || Sbjct 120947 CCGAGGCAAAGAAGCTCAACATTCAGATCTTCGAAACCATTTACCACGCTGCTCTCACTT 120888 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 | ||| || | || ||| | || | || ||||||| | ||||| || | | Sbjct 120887 CATCTTGCGACATTGCCAAAGAGCTTGGCCCGTACGAGACATACCAAGGTTCACCAGTAT 120828 Query 76398 CCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAACTACGACTG 76455 | || || ||| |||| ||| | |||| || | ||| | | || || ||||| Sbjct 120827 CTCAGGGCCAGCTCCAGTACGATCTCTGGG-GTGTCACACCCACTGATC-TCTGGGACTG 120770 Query 76456 GGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 76515 || | | ||||| || || | || | || ||| || | | ||||| Sbjct 120769 GGCTTCATTGAAGGAGAAGATTGCCCAGCATGGCGTCCGCAACTCCCTACTCGTTGCACC 120710 Query 76516 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACAC 76575 ||||| || ||||| || | ||||| | || || || ||||||||||| |||||||| Sbjct 120709 CATGCCTACTGCCTCAACATCTCAAATTCTCGGCAACAACGAATGCTTTGAGCCATACAC 120650 Query 76576 AACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCT 76635 | | ||||||||| | | || || || ||||| | |||||| || Sbjct 120649 ATCGAACATCTACTCTCGCCGTGTGCTTGCCGGAGAGTTCCAAGTGGTCAACCCATGGCT 120590 Query 76636 CGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAA 76695 |||| |||||| | || ||||||||||| || | |||||| | | ||| | Sbjct 120589 GCTCAAGGACCTCGTCGACATGGGTCTCTGGTCTGAGAACATGAAGAACCGCATCATTGC 120530 Query 76696 AGCGGGTGGTTCCATTCA--AAATATCTCAGATATCCCAGATGATATCAAGAATCTCTAC 76753 | ||| || || ||||| ||| || || | ||||| || || | ||| || |||||| Sbjct 120529 TGAGGGCGGCTCGATTCAGCGAAT-TCCCA-ACATCCCTGAAGAGACCAAAAACCTCTAC 120472 Query 76754 CGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC 76813 || || ||||| ||| | | |||| | |||||||| || |||||| Sbjct 120471 AAGACTGTCTGGGAGATCTCTCAGCGCACTATCATCCAGATGGCCGCTGACCGTGGTGCT 120412 Query 76814 TTCATTGATCAAAGTCAAAG--TATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGC 76871 |||||||| | |||| || | |||| | |||| | || || ||| ||| Sbjct 120411 TTCATTGACC--AGTCCCAGTCTTTGAACATCCACATGAAGGAACCCACCATGGGTAAGA 120354 Query 76872 TCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCC 76931 || |||| ||||| | | ||||| | || ||||| ||||| ||||||||||||| Sbjct 120353 TCACTTCCATGCACTTTGCTGGATGGAAGCTTGGTCTCAAGACCGGCATGTACTATCTCC 120294 Query 76932 G 76932 | Sbjct 120293 G 120293 >seq8 Length=981941 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| || || |||| || || | ||| | ||| |||| | || ||||| Sbjct 472979 TGATGTTGCCGGTATGGACGAAGCAAAGCAAGAAATCATGGAGTTTGTCGCCTTCCTCAA 473038 Query 175251 GCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCG 175308 | | |||| ||| | |||| || || |||||||| || || || ||||| | Sbjct 473039 GGAGCCCGGTCGAT--TCCAGAAGCTAGGCGCGAAGATCCCTCGCGGTGCTATTCTCTCT 473096 Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368 || |||||||| || |||||||| ||||| ||||| || || || ||| || Sbjct 473097 GGCCCACCAGGTACTGGTAAGACCCTTCTCGCAAAAGCCACTGCTGGAGAGTCAGGCGTG 473156 Query 175369 CCATTCATCCAGTGCTCTGCCG--CAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || ||| || || | | || | | | ||||||||||||||||| ||||| ||||| Sbjct 473157 CCTTTCTTC-AGCG-TGAGCGGTTCCGAGTTTGTGGAGATGTTTGTCGGTGTCGGTGCAT 473214 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCA-ACCATGTATTGTCTTCATT 175485 | | || || ||| | |||| | || ||| || | || || || ||| ||||||| Sbjct 473215 CACGTGTGCGAGATTTGTTTGCCAATGCTCGC-AAGAGCACTCCTTGCATTATCTTCATC 473273 Query 175486 GATGAGATTGATGC 175499 || || || ||||| Sbjct 473274 GACGAAATCGATGC 473287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567452349440