Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq20 125 2e-23 seq26 98.7 3e-15 seq12 98.7 3e-15 >seq20 Length=946066 Score = 125 bits (138), Expect = 2e-23 Identities = 551/869 (63%), Gaps = 10/869 (1%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || || | ||||||| ||| ||||||||||| |||||| || | ||||||||||| Sbjct 121211 TACTCAATAATCTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTG 121270 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || ||||| || |||||||||||||| ||| | ||| | || || || |||| || Sbjct 121271 CTCTTCCTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCC 121330 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || ||||| |||||| | | ||| || || | | | ||| || | Sbjct 121331 TCGAGAATGGCATACCAGAGCTTCTGAGCACGAACAGTCTCGCGGCCACGGCCCTCGCGC 121390 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870 || || || ||| | | || || || || ||| || |||||| | Sbjct 121391 TCGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCC 121450 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTA---TTACCGATTACACGCTCCATAAATACA 155927 | | |||||| |||| | ||| || | || | ||||||| ||| || | | Sbjct 121451 TCGTTGGGGCAGAACAATGTCCA---TTCACCGTTCTCCTGGACACGCTTCATGAAAAGA 121507 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTC 155987 || ||| | |||||||| || || | || || || | |||||||||| Sbjct 121508 TCTGGGATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTC 121567 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 || || || || | ||| | | ||||| ||| |||||| || || || ||||| Sbjct 121568 TTGCGCAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAAT 121627 Query 156048 CTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||| | |||| ||||||||||| ||||| |||||||| || ||| | |||| Sbjct 121628 GCACCCGGGCGCTTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGA 121687 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 ||||||||||| | ||| || ||||| ||||| || || | || | || |||| | Sbjct 121688 AGCATAGGAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCA 121747 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 || | ||| | || || |||||||| || | || || || | || || | Sbjct 121748 CGGATGCGATGCACATTGAGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTC 121807 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 || | || | | ||||||| ||||| || || | ||| | || |||| || Sbjct 121808 TTAAGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGAT 121867 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 | ||||| ||||| || |||||||| ||||| || | || || | || ||| Sbjct 121868 GACATCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTAC 121927 Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAG 156404 || | ||||| || |||||||| || | ||| |||| | || || || | Sbjct 121928 TTCTGGGACATGTAGTCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCT 121987 Query 156405 ATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGA 156464 | | || | |||| |||||| || || ||||| ||| | || | || || || Sbjct 121988 ACGGCAACACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGG 122047 Query 156465 AGGTATGCGCGTTCCAGAGT-TTTAAACC 156492 ||||||| ||||| || || || ||||| Sbjct 122048 AGGTATGAACGTTCAAGGGTCTTGAAACC 122076 >seq26 Length=862723 Score = 98.7 bits (108), Expect = 3e-15 Identities = 130/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||||||||| || ||||| || |||||||| ||||||||||| || Sbjct 283054 GCACCGTGAGCAATCATACAATCGCGTTCCATCTCTCCGAAACGTAGACCACCATCACGT 282995 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC----GATGGAGCGGCT 251600 || | ||| || ||||||| ||||| | | || |||||| | ||||| Sbjct 282994 GCACGACCTTCCACAGGCTGTCGAGTCAAGATCTGCAAAGGACCACGAGCACGAGCG--- 282938 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || ||| |||| ||||||||| | ||||||||||| | | ||||| | ||| || Sbjct 282937 -TGAATCTTGTCATCGACCATATGCCTCAGACGCTGGTAATAGGTTGGACCCAAGAAAAT 282879 Score = 95.1 bits (104), Expect = 4e-14 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 ||||||||| | || ||| || ||||| | || ||||| ||| || | |||||||| Sbjct 19088 CAGAATTTCCTTAAGACGCGGTACACCTAGTGTAACGTT---CTTAGATGATACACCAGC 19032 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| || || || |||||||| | || || | ||| |||||||| ||| || |||| Sbjct 19031 AAAATGAAACGTGTTCAGAGTCATCTGCGTGGCTGGTTCACCAATGGATTGGGCAGCAAG 18972 Query 301932 CATACCAACCATTTCTCCTGGTGCTACAATAGACTT 301967 | ||||||||| || |||||||| ||| || ||| Sbjct 18971 AACACCAACCATCTCCCCTGGTGCCACAGCAGCCTT 18936 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| |||||||| || || ||||||| | || ||| | || Sbjct 282700 TGAGCAATTGTCATACGAGATGGAATAGCGTGAGGGTTGATGACCAGATCAGGTGTGAGA 282641 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 ||||| |||||||||||| | ||| | || || || | ||||| || ||||| || Sbjct 282640 CCATCGCTAGTGAAGGGCATGT-CTTCTTGTCGGTATGTGATACCAATTGTACCCTTCTG 282582 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| ||||| |||||| |||||||| Sbjct 282581 ACCGTGGCGAGAGGCGAACTTGTCACCAAT 282552 Score = 84.2 bits (92), Expect = 6e-11 Identities = 109/150 (73%), Gaps = 8/150 (5%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||||||||||||||||||| |||||||| || || | ||| |||||||||||| | Sbjct 283054 GCACCGTGAGCAATCATACAATCGCGTTCCATCTCTCCGAAACGTAGACCACCATCACGT 282995 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCT----TGGACCCTGAGCACGATA 233388 | | ||| | || | || ||||| | || ||| ||||| |||||||| Sbjct 282994 GCACGACCTTCCACAGGCTGTCGAGTCA----AGATCTGCAAAGGACCACGAGCACGAGC 282939 Query 233389 ATTAATTTTATCTTTAACCATATGCTTCAG 233418 | ||| || || | ||||||||| |||| Sbjct 282938 GTGAATCTTGTCATCGACCATATGCCTCAG 282909 >seq12 Length=492158 Score = 98.7 bits (108), Expect = 3e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||||| ||||||||| |||||||| || ||||| |||||||||||||| || | ||| || Sbjct 130500 AATCAAACAATCACGTTCCATTTCTCCCAAACGCAGACCACCATCGCGTGCTCGACCTTC 130559 Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615 || |||||| |||||||| || | | ||||| || || || ||| || | Sbjct 130560 GGTAGGCTGGCGAGTGAGGATAGCTCTGGGACCACGGGCACGCGCGTGCATCTTGTCTTG 130619 Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 ||||| |||||||| ||||||| | ||| |||| ||| Sbjct 130620 GACCATGTGCTTGAGTTTCTGGTAGTAGATGGGGCCGAAGAA 130661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812168993056