Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq27 143 3e-28 seq47 114 2e-19 seq20 100 3e-15 >seq27 Length=812739 Score = 143 bits (158), Expect = 3e-28 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| || |||||||||||||| | |||||||| Sbjct 400415 GCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCAAGCGAGATG 400474 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | ||||| ||| | || || | | | Sbjct 400475 TTCTCCATGAAGTCGAAGGGGTTTGTGGAGTTGTATACCTTGGTGTTGCCAAGAGCCAAG 400534 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||| | Sbjct 400535 AGCAGACGGTCAGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGC 400594 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| | | ||||| | ||||||||| || ||||| |||| Sbjct 400595 AGAGCACAGGGAAGAGCCTCGGTAAGGAACTCCTGCTCGATCTCCACAGCCTCAGTGATG 400654 Query 868931 ATCTGCCTG--GGCA-CGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || | || |||| | | | | | | ||||||| ||| | | |||||| ||| Sbjct 400655 ATAGCCTTGACGGCATCCTTGCTGGGGCGGTTGTTGAGGAG---TGAGAAGAGCAAGCAA 400711 Query 868988 GCAAAGTCGCAGTGCA 869003 |||||||||||||||| Sbjct 400712 GCAAAGTCGCAGTGCA 400727 Score = 96.9 bits (106), Expect = 4e-14 Identities = 168/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||||||||| ||| | | || | | || Sbjct 401059 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCTTCGGGTATTT 401118 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 ||||||| | ||| || || | ||||||||| || ||||| ||| ||| |||| Sbjct 401119 GGACCTCGCTGGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCATCGGAGGCAGCGA 401178 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGT 869807 | ||||| |||||||| ||| ||| ||||||||| || | | || ||||| Sbjct 401179 AGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCATTCAGGCGCTTGTTCCAGT 401238 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | || | ||| || | ||| || |||||||||| || || |||||||| | Sbjct 401239 CGTGAAGATCCTTGGAGAGATCAATCTCTTCTGCGGTCCAGAAGGAAGCTTCGGCCTTCT 401298 Query 869868 TGTA 869871 |||| Sbjct 401299 TGTA 401302 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/195 (72%), Gaps = 11/195 (6%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || || ||| ||| | |||||| |||| || |||||||| ||||| |||||| Sbjct 400730 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCACGCTTC 400789 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||||||||||| ||| || ||| ||| ||||| |||||||| || || || Sbjct 400790 TTGAGCCAAAAGATGGAAGCA-AAGGAGCCACTGAAGAAGATACCCTCGACAGCAGCGAA 400848 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 | | | || || |||||| |||||| | ||||| ||||||| || || Sbjct 400849 GGCAACAAGGCGGGTGGCAAA--AGTCGAG----TTCTTGTCTGTGATCCATCGCAGAGC 400902 Query 869356 CCAGTCGGCCTTTTT 869370 |||||||||||| || Sbjct 400903 CCAGTCGGCCTTCTT 400917 >seq47 Length=433863 Score = 114 bits (126), Expect = 2e-19 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||| || || ||||| |||||| |||| || ||| | || |||||| | || |||||| Sbjct 336109 GCCGCAAATTATCTCGATATCAAGGCTCTCCTTGATGTAGGCTGCAAGACCGTTGCCAAC 336050 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| ||||| |||||||||||||| || || ||| || Sbjct 336049 ATGATCAAGGGCAAGTCTCCCGATGAGATCCGCAAGACATTCAATATCCAG 335999 >seq20 Length=946066 Score = 100 bits (110), Expect = 3e-15 Identities = 202/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| || || || |||| ||| | || || ||||| || | ||| ||||| || Sbjct 121651 CTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGA 121710 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || || ||||| | | ||| | ||| | ||| || | ||| | | || Sbjct 121711 AGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGCACATTGAGACC 121770 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | |||||||||||| || || || || |||||||| || ||||| Sbjct 121771 AATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTC 121830 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| | || ||||| || || | || || | ||||| Sbjct 121831 AATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCC 121890 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || ||||| ||| | | |||||| |||||| || Sbjct 121891 TGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACATGTAGTCGTATGT 121950 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 || ||||| || || || || || |||||| | ||| || | ||||| || ||| Sbjct 156282 GATAGCATAGGTGGTACTGTTACATGCGTGATAAGAAACTGCCCTACCGGCCTGGGAGAG 156223 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| ||||||| ||| || || || ||||| || ||||| |||||| Sbjct 156222 CCATGCTTCGACAAGCTCGAGGCGAAGCTGGCACATGCGATGCTTTCCATCCCAGCCACC 156163 Query 19167 AAGGGATTCGAGATTGG 19183 ||||| ||||||||||| Sbjct 156162 AAGGGCTTCGAGATTGG 156146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107115565371296