Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq20 116 3e-21 seq82 96.9 3e-15 >seq20 Length=946066 Score = 116 bits (128), Expect = 3e-21 Identities = 469/727 (65%), Gaps = 29/727 (4%) Strand=Plus/Plus Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 ||||||||||| | |||||| || || || || || ||| |||||| ||| | Sbjct 121385 TCGCGCTCGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCA 121444 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | || || || || | | | |||| | |||||| ||| ||| ||| ||||||| Sbjct 121445 GGGGCCTCGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAA 121504 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC-----CTTCTTATCTTCCGAAC 139471 ||||| || ||||| | || | | | |||||| || |||||| | ||| Sbjct 121505 AGATCTGGGATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGA 121564 Query 139472 CCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGA 139531 | || || || || ||||||| |||| || ||||| |||||||| || || |||| Sbjct 121565 T--TCTTGCG---CAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGA 121619 Query 139532 TGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGA 139588 |||| | ||| || || ||| ||||| |||||||| | || ||| || ||| Sbjct 121620 TGGCAAATGCACCCGGGCGCTTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGT 121679 Query 139589 ATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGT 139648 | || || | ||| || |||||| | | || || || |||| | |||| || Sbjct 121680 AAACACGAAGCATAGGAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTA--TGA 121737 Query 139649 TGCGAG---CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTA 139705 || || | |||| | ||| ||||||| || || ||||| || ||||| || | Sbjct 121738 -GCCAGTGGCACGGATGCGATGCACATTGAGACCAATACCGCCAGCAGTCTTGGAGATGA 121796 Query 139706 AAACGCAATCGCGTAA-TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACC 139764 | || | ||| ||| ||||| ||||| |||||||| |||| ||| | Sbjct 121797 GTGCACAGGT-CTTAAGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATA 121855 Query 139765 AGAAAGCATGACGAAAGTTGCGGT--AGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCG 139822 || ||||| || || | || || || | ||||| || || || || || | Sbjct 121856 AGGAAGCAAGATGACATCTGAGGCGAAGGT--GTGCCTGCGTTGAAGAGTGTGGGGGAAG 121913 Query 139823 CGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCC 139882 |||| ||||| | | ||||| | ||||| ||||| || || | |||| || Sbjct 121914 CGTGTGTGAAGTACTTCTGGGACATGTAGTCGTATGTTTCAATCGCCTTTTCAATGTCTT 121973 Query 139883 TTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGC 139942 ||| || || || || | || ||||||||||||||||| || || || ||| || Sbjct 121974 CTCCATGTATGCCTACGGCAACACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGC 122033 Query 139943 CCTCGAtttttttCAG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTT 140000 | | ||| || || | ||| || ||||||||| | |||||| || ||||| Sbjct 122034 CGTTGATGCGGAGGAGGTATGAACGT--TCAAGGGTCTTGAAACCAAAGAACTGGTAGTT 122091 Query 140001 GAAATCG 140007 ||||||| Sbjct 122092 GAAATCG 122098 >seq82 Length=92890 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || ||||| ||||| | | || || | || | || || Sbjct 13670 ACCGGCAAGACCATCACCCTCGAGGTAGAGTCTTCGGATACCATCGACAATGTCAAGAGC 13611 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| || || || || || ||||| || || || || |||||||| ||||| || Sbjct 13610 AAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAG 13551 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||| | | | |||| || || ||||| ||||||||||| || || ||| Sbjct 13550 CAGCTCGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTCTCCAC 13491 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | ||| | || ||||||| || Sbjct 13490 CTTGTGCTTCGCCTGCGCGGTGG 13468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | ||||| || | | | Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | ||||| |||||||| || || || || || ||||| || || Sbjct 12888 GACACAATCGACAATGTAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 12829 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||| ||||||| ||| | || || || ||| Sbjct 12828 CAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTTCCGACTACAAC 12769 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || ||| | |||||||| Sbjct 12768 ATTCAGAAAGAGTCCACATTGCACTTGGT 12740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895980368640