Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq27 122 1e-21 seq47 111 2e-18 seq37 100 5e-15 seq20 91.5 2e-12 >seq27 Length=812739 Score = 122 bits (134), Expect = 1e-21 Identities = 223/324 (69%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| ||| || |||||||||||||| | | Sbjct 400407 TGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCAA 400466 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||| | | ||| ||| | || | Sbjct 400467 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTGGAGTTGTATACCTTGGTGTTGCCAA 400526 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||| ||||| || ||||||||||||||||||||| |||||||| Sbjct 400527 GAGCCAAGAGCAGACGGTCAGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCA 400586 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||| || | |||| | | ||||| | ||||||||| || |||| Sbjct 400587 TGCCCAGCAGAGCACAGGGAAGAGCCTCGGTAAGGAACTCCTGCTCGATCTCCACAGCCT 400646 Query 794131 CGATGATGATCTGCCTG--GGCA-CGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGA 794187 | ||||||| | || |||| | | | | | |||| || ||| | | ||| Sbjct 400647 CAGTGATGATAGCCTTGACGGCATCCTTGCTGGGGCGGTTGTTGAGGAG---TGAGAAGA 400703 Query 794188 GCAGGCAGGCAAAGTCGCAATGCA 794211 ||| ||| ||||||||||| |||| Sbjct 400704 GCAAGCAAGCAAAGTCGCAGTGCA 400727 Score = 86.0 bits (94), Expect = 1e-10 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || ||| ||| | |||||| ||| || |||||||| ||||| |||||| Sbjct 400730 CCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCACGCTTC 400789 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||||||||||| | || ||| ||| ||||| |||||||| || || ||| Sbjct 400790 TTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAGAAGATACCCTCGACAGCAGCGAAG 400849 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || || || ||||||| ||| || | | | || ||||||| || ||||| Sbjct 400850 GCAACAAGGCGGGTGGCAAAA--GTCGAGTTCTTGTCTG-TGATCCATCGCAGAGCCCAG 400906 Query 794521 TCTGCCTTTTT 794531 || ||||| || Sbjct 400907 TCGGCCTTCTT 400917 >seq47 Length=433863 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||||| || || ||||| |||||| | ||||| ||| | || ||||||||||| |||||| Sbjct 336109 GCCGCAAATTATCTCGATATCAAGGCTCTCCTTGATGTAGGCTGCAAGACCGTTGCCAAC 336050 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||||| ||||| || ||||||||||| || || ||| || Sbjct 336049 ATGATCAAGGGCAAGTCTCCCGATGAGATCCGCAAGACATTCAATATCCAG 335999 >seq37 Length=525954 Score = 100 bits (110), Expect = 5e-15 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 || |||||||| ||| || | ||||||||| || ||||| || || || ||| Sbjct 179316 TCGATCTTGGAATCGGGGTCTGAAGAGCTCATCTTTCCA-CCTTGTAGA--CCTGGAACC 179372 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | ||||| | ||| || ||||| |||||||||| |||||| || ||| Sbjct 179373 ATGGGGTTCATCAGATGTGCGCGCTCCTTGTAGCCCAGCTTAGGCAGGACCTCCTTTGCA 179432 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | ||||||||||||||||| ||| || ||||| || |||| || || |||| |||| Sbjct 179433 AGCGCAAAGATCTTGCGCTGATCGACACCACCAAATTGCACGTCAACATCCAGGTACTGC 179492 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTA 2411591 ||||| || |||||||| || ||||| Sbjct 179493 TCGTCAAGAGCCTGCATAAGAGGGTA 179518 >seq20 Length=946066 Score = 91.5 bits (100), Expect = 2e-12 Identities = 200/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| |||||||| || || |||| ||| | || || ||||| || | || ||||| || Sbjct 121651 CTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGA 121710 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 || || ||||| | | ||| | ||| | ||| || | ||| | | || Sbjct 121711 AGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGCACATTGAGACC 121770 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | |||||||||||| || || | || || || ||||| || ||||| Sbjct 121771 AATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTC 121830 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || || | || || | ||||| Sbjct 121831 AATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCC 121890 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || |||||||| ||||| | || ||| | ||| ||||||||| ||||| || Sbjct 121891 TGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACATGTAGTCGTATGT 121950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916215764126432