Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq82 100 2e-16 seq59 89.7 3e-13 >seq82 Length=92890 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||||| ||| ||||||||| ||||| |||||||| ||| | || | || Sbjct 13192 CAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGGCCGTC 13251 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||||| ||||||||||| | || | || ||||| || Sbjct 13252 TTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCCTTATC 13311 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||| ||||||||||| ||||| || || | || | || Sbjct 12737 AGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCC 12796 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||| || || |||||||| | || | |||||||| || Sbjct 12797 TCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 12856 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| || | | ||| || || | || || Sbjct 12857 TGGATCTTGGACTTTAC--AT--TGTCGATTGTGTCGCTCGACTCAACTTCCAATGTGAT 12912 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || || ||||| || ||||||||||| Sbjct 12913 GGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||| || ||||| ||||| || | | |||| |||| Sbjct 13483 AGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 13542 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||||||||||| || ||||||||| | || | |||||||| || Sbjct 13543 TCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATC 13601 >seq59 Length=254989 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||||||||| ||||| || || || || | || |||| Sbjct 239623 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCC 239682 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| ||||||||||| || || || ||||| | || | ||||||||||| Sbjct 239683 TCCAACTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATGCCCTCCTTGTC 239741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691656818272