Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq20 217 1e-51 seq27 167 2e-36 seq82 114 1e-20 >seq20 Length=946066 Score = 217 bits (240), Expect = 1e-51 Identities = 1116/1757 (64%), Gaps = 47/1757 (3%) Strand=Plus/Plus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103 || || |||||| |||||||||||| || ||||||||||||||||| | |||| || Sbjct 120386 TTCAAAGACTGGGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTGGATGATAGTG 120445 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| ||||||||| | |||||||| || ||| | | || || ||| | Sbjct 120446 CGCTGAGAG---ATCTCCCAGACAGTCTTGTAGAGGTTTTTGGTCTCTTCAGGGATGTTG 120502 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 || ||||| | |||||||| | |||| || | || ||| | || | | Sbjct 120503 GGAATTCGCTGAATCGAGCCGCCCTCAGCAATGATGCGGTTCTTCATGTTCTCAGACCAG 120562 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 || | |||| ||||| | || ||| | | || ||||| || ||||| ||||| Sbjct 120563 AGACCCATGTCGACGAGGTCCTTGAGCAGCCATGGGTTGACCACTTGGAACTCTCCGGCA 120622 Query 148284 AGCACGCGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAA 148342 ||||| || || ||| || | ||| || | || ||||| | ||||||||||| | Sbjct 120623 AGCACACGGCG-AGAGTAGATGTTCGATGTGTATGGCTCAAAGCATTCGTTGTTGCCGAG 120681 Query 148343 AATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCG 148402 ||| || | || | || || |||||| || || || || |||||||| | || | Sbjct 120682 AATTTGAGATGTTGAGGCAGTAGGCATGGGTGCAACGAGTAGGGAGTTGCGGACGCCATG 120741 Query 148403 ATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCA 148462 | || || ||||| | |||||||||||||| | ||||| || ||| Sbjct 120742 CTGGGCAATCTTCTCCTTCAATGAAGCCCAGTCCCAGAGATCAGTGGGTGTGACACCCCA 120801 Query 148463 CATGTCGTACTGCAGAATGCCGCG-GCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTC 148521 | |||||||| || ||| | | || || | || | ||| | |||||| | Sbjct 120802 GAGATCGTACTGGAGCTGGCCCTGAGATACTGGTGAA-CCTTGGTATGTCTCGTACGGGC 120860 Query 148522 CGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAA 148581 | || | || | ||||| | ||| || ||| |||||| || ||| | Sbjct 120861 CAAGCTCTTTGGCAATGTCGCAAGATGAAGTGAGAGCAGCGTGGTAAATGGTTTCGAAGA 120920 Query 148582 TTTGCCTGTTGAGCAGCGCCGCC--GACTCGCTTTCGTACGGCATACGCAGCCGCACAAA 148639 | || |||||||| | ||| | || || | | |||| | || | || Sbjct 120921 TCTGAATGTTGAGCTTCTTTGCCTCGGCTGACT--CAAAGGGCAGTCTCAAAGCGAGGAA 120978 Query 148640 CGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCG 148699 || || ||||| || ||||| || | |||||||||| ||| | ||| | |||| Sbjct 120979 AGCATCAGCAAGACCTTGTACACCAAGACCAATGGGCCTGTGACGGAAGTTACTGCGGCG 121038 Query 148700 CGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCAC 148759 || ||| | |||||||||||| || |||||||| | |||||||| || || Sbjct 121039 TGCCTCCTCAACAGGATAGTGGTTGACCTCAATGATCTTATTGAGATTGCGAGTGACAAC 121098 Query 148760 CTTTGTAA-TTC-TGCG----CAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCA 148810 || || | ||| || | | || || || ||| ||| | || |||| | Sbjct 121099 CTGAGTGACTTCATGAAGTTTCTGGAAGTCGAACTCGCCACGCTTATAGTCAACGAAAGA 121158 Query 148811 TCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870 | | || |||| |||||| || ||||| || || |||||| || || | ||||| Sbjct 121159 TGG---CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTC 121215 Query 148871 TACGATCTCGGCGCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTGCT 148927 | ||||| | ||| || || |||| || | || | |||||| || ||||| Sbjct 121216 AATAATCTCAGTGCAGAGGTTAGAACTGCGGATGGTACCG---AGGTTCTTCTGGTTGCT 121272 Query 148928 CTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||| |||||||| || |||||||| |||||| | || |||||||| ||| | || Sbjct 121273 CTTCCTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTC 121332 Query 148988 CACTATG--AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGC 149045 | ||| | | | || | ||| || || || || | || ||||| || Sbjct 121333 GAGAATGGCATACCAG--AGCTTCTGAGCACGAACAGTCTCGCGGCCACGGCCCTCGCGC 121390 Query 149046 TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCAC 149105 ||||| | || ||| || ||| | ||||| ||| || | || || ||| | Sbjct 121391 TCGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCC 121450 Query 149106 TTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCG 149165 | || ||||| | | | ||| | |||| | | | || |||||||| || ||||| Sbjct 121451 TCGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCT 121510 Query 149166 GGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGG 149225 || | |||||| || || | ||| ||||| || ||||| ||| || | Sbjct 121511 GGGATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTG 121570 Query 149226 CGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCG 149285 ||||||| || | | || | || || ||||| ||||| | ||| | || | || Sbjct 121571 CGCAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCA 121630 Query 149286 CCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACC 149342 ||| ||||||| || ||||| ||||| | || | ||||||| | || |||| | Sbjct 121631 CCCGGGCGCTTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGC 121690 Query 149343 ATAGGTTCAATGCCACTG---GCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT 149399 ||||| |||| || | | ||| || ||||| | ||| ||| || Sbjct 121691 ATAGG---AATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCA 121747 Query 149400 CGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTC 149458 || | ||||| |||| || || ||||| || || ||| |||||| || ||| Sbjct 121748 CGGATGCGATGCACATTGAGACCAATACCGCCAGCAGT-CTTGGAGATGAGTGCACAGGT 121806 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 || || ||| || ||||| |||||||| ||||||| | || ||||| || Sbjct 121807 CTTAAGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGA 121866 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 |||| || || || | ||||| || ||| | |||||| |||||||| || || Sbjct 121867 TGACATCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTA 121926 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 |||||| ||| ||||| | || | | | || ||||| || ||||| ||||| Sbjct 121927 CTTCTGGGACATGTAGTCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCC 121986 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 || ||| || |||||||||||||| || |||||||| || || ||| || ||| Sbjct 121987 TACGGCAACACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAG 122046 Query 149699 CAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTG 149758 | ||| ||| || |||||| | |||||| ||| ||||| || |||||| ||| Sbjct 122047 GAGGTATGAACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAATCGCGGTCGTA 122106 Query 149759 GTCAATGGCGGCGTCGA 149775 | ||||||| | || || Sbjct 122107 GACAATGGCAGAGTTGA 122123 >seq27 Length=812739 Score = 167 bits (184), Expect = 2e-36 Identities = 356/523 (68%), Gaps = 23/523 (4%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || ||||| || |||||||| ||||| || ||||| | | ||| ||||| | Sbjct 400420 CTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTC 400479 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTAT---TTCGGCTGGCCCAACTGTACGAG 120467 ||| || ||||| ||||| | | ||| |||| || | | ||| | | ||| Sbjct 400480 CATGAAGTCGAAGGGGTTTGTGGAGTT---GTATACCTTGGTGTTGCCAAGAGCCAAGAG 400536 Query 120468 CAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAA 120527 ||| ||||| || |||||||||||||||| ||||||| | |||||||||||||||| Sbjct 400537 CAGACGGTCAGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAG 400596 Query 120528 CGCCACCGGCAA-CGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACA 120586 | ||| || || ||| || | ||||||| ||| || ||||| ||||| ||| | Sbjct 400597 AG-CACAGGGAAGAGCCTCGGTAAGGAACTCCTGCTCGATCTCCACAGCCTCAGTGATGA 400655 Query 120587 TGGC---GA--GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAG 120641 | || || |||| | || ||| | | | | || | | | || || Sbjct 400656 TAGCCTTGACGGCAT--CCTTGCTGGG------GCGGTTGTTGAGGAGTGAGAAGAGCAA 400707 Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 ||| |||||||| ||||| |||||| || || || || ||||||||| || ||||| Sbjct 400708 GCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 400767 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 |||||||| | ||| | |||||| | || |||| |||||| ||| ||||| Sbjct 400768 ACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAGAA 400827 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGT 120820 | ||||| || || ||||| || | ||| ||| || |||| ||||| |||| Sbjct 400828 GATACCCTCGACAGCAGCGAAGGCAACAAGGCGGGTGGCAAAAGTCGAGTTCTTGTCTGT 400887 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||| || ||||| |||||||| ||||| | ||| || Sbjct 400888 -GATCCATCGCAGAGCCCAGTCGGCCTTCTTGCGGATGCATGG 400929 >seq82 Length=92890 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || |||||||| || ||||| ||| | ||| | | | || || || Sbjct 12971 AAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCA-TCTTCAAG 13029 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | ||||| ||||| ||||| ||||| || ||||||||||| || Sbjct 13030 CTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAAT 13089 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | ||||| || | ||| | || ||||| Sbjct 13090 CTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCC 13149 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || |||||||| ||||| Sbjct 13150 AGTCAGAGTCTTGACGAAAATTTGCAT 13176 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||||||||| || ||||| ||| | || || || ||||| | |||||| | Sbjct 12752 GTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCG--TCCTCCAACTGCTTAC 12809 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| |||||||| || ||||| || |||||| || Sbjct 12810 CAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGACT 12869 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | ||| || || | |||| ||| || || ||||| | Sbjct 12870 TTACATTGTCGATTGTGTCGCTCGACTCAACTTCCAATGTGATGGTCTTTCCAGTCAGTG 12929 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 12930 TCTTGACGAAGATCTGCAT 12948 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || || ||||| ||| || ||| ||| | || ||||||||||| || Sbjct 13498 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCTTCGAGCTGCTTTCC 13556 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| ||||||||||| ||||| || |||||| ||| Sbjct 13557 GGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTT 13616 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | || || | | ||| || |||| ||||| ||| |||||||| Sbjct 13617 GACATTGTCGATGGTATCCGAAGACTCTACCTCGAGGGTGATGGTCTTGCCGGT 13670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| || || || ||| ||| ||||||||||| Sbjct 13207 GGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGT--ACGGCCGTCTTCGAGCTGCTTT 13264 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || | || |||||||| ||||| ||||||||||| || |||||| | Sbjct 13265 CCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTCGAC 13324 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 |||| | || | || || | || || || |||| |||| ||| |||||||||| Sbjct 13325 TTGACGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTGATGGTCTTGCCGGTCA 13382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419059685120