Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq20 132 1e-25 >seq20 Length=946066 Score = 132 bits (146), Expect = 1e-25 Identities = 442/681 (65%), Gaps = 9/681 (1%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||||||||| || ||||||||| | || | || || |||| ||| || | ||| Sbjct 122079 TTTGGTTTCAAGACCCTTGAACGTTCATACCTCCTCCGCATCAACGGCAAGGTTGCTGAG 122020 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 || || ||||| ||| | | |||||||| | || || |||||| | || ||| || Sbjct 122019 CGACCACAACATATGCTGATGCGTGTTGCCGTAGGCATACATGGAGAAGACATTGAAAAG 121960 Query 110427 GTTATTGAATGTTATGATGTATTAAGTA--AAAAGAAAGCTATTCATGCTACTCCTACCC 110484 | |||||| || || || | || | ||| | | || ||| | || || | Sbjct 121959 GCGATTGAAACATACGAC-TAC-ATGTCCCAGAAGTACTTCACACACGCTTCCCCCACAC 121902 Query 110485 TATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACG 110544 | || |||||||| || | || || | |||||||| ||| | | || || | Sbjct 121901 TCTTCAACGCAGGCACACCTTCGCCTCAGATGTCATCTTGCTTCCTTATTGACATGAAGG 121842 Query 110545 ATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 | || ||||| |||||||| || | ||||| ||| || || || || | Sbjct 121841 AAGACAGCATTGAGGGTATTTACGACACACTTAAGACCTGTGCACTCATCTCCAAGACTG 121782 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 |||| || |||||| | | || ||| || || | | || || | |||| | Sbjct 121781 CTGGCGGTATTGGTCTCAATGTGCATCGCATCCGTGCCACTGGCTCATACATCGGAGGCA 121722 Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 | || ||| |||||| || || |||| ||| | | || | |||| ||||||| | Sbjct 121721 CTAATGGTACTTCAAACGGTCTCATTCCTATGCTTCGTGTTTACAACAACACTGCTCGTT 121662 Query 110725 ATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 |||| |||| ||||| || | | || ||||||| ||||| ||||| || |||| Sbjct 121661 ATGTCGATCAGGGTGGCAACAAGCGCCCGGGTGCATTTGCCATCTACCTCGAGCCATGGC 121602 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 || | ||| | |||| ||| | || || || || ||||| || |||||| | | Sbjct 121601 ATGCTGATGTCTTTGGTTTCCTTGACCTGCGCAAGAATCACGGCAAGGAAGAAGTTCGTG 121542 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | || ||| | || ||||| | ||||| ||||| | |||||||| ||||| || || | Sbjct 121541 CCCGCGATCTCTTCTATGCCCTCTGGATCCCAGATCTTTTCATGAAGCGTGTCCAGGAGA 121482 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTT-CTCCTGGTCTATCTGATGTATATGGA 110960 | || ||| | | | || || || || | ||||| || |||| || ||||| Sbjct 121481 ACGGTGAATGGACATTGTTCTGCCC-CAACGAGGCCCCTGGCCTTGCTGACGTCTATGGC 121423 Query 110961 AAAGAGTTTGAAGACCTTTAC 110981 | ||||||||||| || ||| Sbjct 121422 GATGAGTTTGAAGAGCTCTAC 121402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808420660768