Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq82 98.7 2e-15 >seq82 Length=92890 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || || || |||| |||||| || |||||| |||| Sbjct 13162 CAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCGGACACAATCGACAA 13103 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| || ||||| ||| || ||| || | || ||||| Sbjct 13102 CGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAGCGTCTCATCTT 13043 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | |||||||| | ||| | |||| |||||| |||||||||| || Sbjct 13042 CGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAACATCCAGAAAGAATC 12983 Query 206364 TACTCTTCA 206372 || || || Sbjct 12982 GACCCTCCA 12974 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| | ||||| ||| || || || |||| || ||| Sbjct 13380 ACCGGCAAGACCATCACACTCGAAGTCGAATCCTCAGATACCATCGACAACGTCAAGTCG 13321 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| ||| | | ||||||||||||||| Sbjct 13320 AAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAACGCTTGATCTTCGCCGGAAAG 13261 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||| || | || || | || |||||| ||||||| |||||||| |||||| Sbjct 13260 CAGCTCGAAGACGGCCGTACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTTCAC 13201 Query 206374 CTTGT 206378 ||||| Sbjct 13200 CTTGT 13196 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||| ||||||| || ||||| | || || | || ||||| Sbjct 13196 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGGCCGTCTTCG 13255 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||||||||| | ||||| || Sbjct 13256 AGCTGCTTTCCGGCGAAGATCAAGCGTTGCTG 13287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816439081248