Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq82 95.1 1e-14 seq27 91.5 1e-13 >seq82 Length=92890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||||||| | | | || ||||| || |||||||||||| | || Sbjct 12955 ACGCAGGCGGAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGT 13014 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| ||||||||||| |||||||| || || Sbjct 13015 GCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACC 13074 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| || || | | || | || || | | ||||| || | Sbjct 13075 TTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAG 13134 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||||||| || | |||||| ||||| Sbjct 13135 GGTAATTGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 >seq27 Length=812739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| ||| ||||| ||||||| |||| | ||| || ||| || |||||||| Sbjct 400647 GAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCCCTGTGCTCTGCTGGGC 400588 Query 47106 ATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164 |||||||| || || |||||| | || ||||||||||| || || |||||| | || Sbjct 400587 ATGAACGC-CAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGACCGTCTGCTCTTGGC 400529 Query 47165 GCTCGG-ACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTT 47223 || || | ||| | ||| | | | | || || || || || ||| | ||||| | Sbjct 400528 TCTTGGCAACACCAAGGTATACAACTCCAC-AAACCCCTTCGACTTCATGGAGAACATCT 400470 Query 47224 CGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 |||| | ||||| ||||| || || ||||| || ||||| || || Sbjct 400469 CGCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 400424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609484199680