Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21]
288 sequences; 32,067,383 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq27 147 3e-29
seq20 100 4e-15
>seq27
Length=812739
Score = 147 bits (162), Expect = 3e-29
Identities = 199/275 (72%), Gaps = 12/275 (4%)
Strand=Plus/Minus
Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA----CA 1455846
||| |||||||| || ||||| |||||||| || ||| | || ||| | || ||
Sbjct 401300 CAAGAAGGCCGAAGCTTCCTTCTGGACCGCAGAAGAGATTGATCTCTCCAAGGATCTTCA 401241
Query 1455847 CGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCG 1455903
|| ||||| || ||| || ||||||||| |||||| ||||||||||
Sbjct 401240 CG----ACTGGAACAAGCGCCTGAATGATGACGAGCGCTTCTTCATCTCCCACGTCCTCG 401185
Query 1455904 CCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAA 1455963
| ||| ||||| ||| ||||||||| || ||||||||| | || || || |
Sbjct 401184 C-TTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGATTCTCCAGC 401126
Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023
||||||||| | || || ||||| | || ||||| ||||||||| || || ||||||
Sbjct 401125 GAGGTCCAAATACCCGAAGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 401066
Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTA 1456058
||||| ||||||||||| ||||| |||||||||||
Sbjct 401065 CACTCGGAAACCTACTCTCTCCTCATCGACACCTA 401031
Score = 123 bits (136), Expect = 4e-22
Identities = 232/333 (70%), Gaps = 10/333 (3%)
Strand=Plus/Minus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511
||||||| |||||||| || |||||| | | ||| ||||||| | | | | | |
Sbjct 400727 TGCACTGCGACTTTGCTTGCTTGCTCTTCTCA---CTCCTCAACAACCGCCCCAGCAAGG 400671
Query 1456512 -TGCC--CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568
|||| |||| |||||| ||||| || ||||||||| | ||||| | | ||||
Sbjct 400670 ATGCCGTCAAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGG 400611
Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628
| || || || || | ||||||||||||| | ||||||||||||||||||| | ||
Sbjct 400610 CTCTTCCCTGTGCTCTGCTGGGCATGAACGCCAAC-CTCATGTGCCAGTACATTG-AGTT 400553
Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688
|||||| ||||| |||||| ||| || ||| | ||| ||| | | ||||
Sbjct 400552 TGTCGCTGACCGTCTGCTCTTGGCTCTTGGCAAC-ACCAAGGTATACAACTCCACAAACC 400494
Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748
| ||| | |||||| |||||||| | |||||||||||||| || ||| || |
Sbjct 400493 CCTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTG 400434
Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780
| || || ||| ||||| || |||| ||||
Sbjct 400433 TCGGTGACTACCAGAAGGCTGGTGTCATGGCCA 400401
Score = 93.3 bits (102), Expect = 6e-13
Identities = 119/158 (75%), Gaps = 11/158 (7%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179
|| |||||||||||||| || ||||||| ||||| | |||||| ||||||
Sbjct 400917 AAGAAGGCCGACTGGGCTCTGCGATGGATCACAGACAAGAA----CTCGACT-TTTGCCA 400863
Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CC 1456237
|| || || | ||| || || |||||||| ||||| ||| ||| || ||| ||
Sbjct 400862 CCCGCCTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTCCTT-TGCTTCC 400804
Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||||||||||||||||| ||||| |||||||||||
Sbjct 400803 ATCTTTTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCT 400766
>seq20
Length=946066
Score = 100 bits (110), Expect = 4e-15
Identities = 207/304 (68%), Gaps = 8/304 (3%)
Strand=Plus/Minus
Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942
|| ||||| |||||| ||| ||| ||||| || | ||||| ||||| || ||
Sbjct 121950 ACATACGACTACATGTCCCAGAAGTACTTCACACACGCTTCCCCCACACTCTTCAACGCA 121891
Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002
||||| || || |||| || || ||||| || | |||||||||| || ||
Sbjct 121890 GGCACACCTTCGCCTCAGATGTCATCTTGCTTCCTTATTGACATGAAGGAAGACAGCATT 121831
Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062
||||| || || ||||| || ||| || || |||||||||||| | || ||||| ||
Sbjct 121830 GAGGGTATTTACGACACACTTAAGACCTGTGCACTCATCTCCAAGACTGCTGGCGGTATT 121771
Query 260063 GGTTT---TGCCGCA-CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGG 260118
||| | || ||| | || | || ||| | ||| | ||| | | ||||| || ||
Sbjct 121770 GGTCTCAATG-TGCATCGCA---TCCGTGCCACTGGCTCATACATCGGAGGCACTAATGG 121715
Query 260119 CCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGA 260178
|| ||||| || | || |||||||| |||| ||| |||| || || || |||||
Sbjct 121714 TACTTCAAACGGTCTCATTCCTATGCTTCGTGTTTACAACAACACTGCTCGTTATGTCGA 121655
Query 260179 CCAG 260182
|||
Sbjct 121654 TCAG 121651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177783421870656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |