Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq27 147 3e-29 seq20 100 4e-15 >seq27 Length=812739 Score = 147 bits (162), Expect = 3e-29 Identities = 199/275 (72%), Gaps = 12/275 (4%) Strand=Plus/Minus Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA----CA 1455846 ||| |||||||| || ||||| |||||||| || ||| | || ||| | || || Sbjct 401300 CAAGAAGGCCGAAGCTTCCTTCTGGACCGCAGAAGAGATTGATCTCTCCAAGGATCTTCA 401241 Query 1455847 CGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCG 1455903 || ||||| || ||| || ||||||||| |||||| |||||||||| Sbjct 401240 CG----ACTGGAACAAGCGCCTGAATGATGACGAGCGCTTCTTCATCTCCCACGTCCTCG 401185 Query 1455904 CCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAA 1455963 | ||| ||||| ||| ||||||||| || ||||||||| | || || || | Sbjct 401184 C-TTTCTTCGCTGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGATTCTCCAGC 401126 Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 ||||||||| | || || ||||| | || ||||| ||||||||| || || |||||| Sbjct 401125 GAGGTCCAAATACCCGAAGCACGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 401066 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTA 1456058 ||||| ||||||||||| ||||| ||||||||||| Sbjct 401065 CACTCGGAAACCTACTCTCTCCTCATCGACACCTA 401031 Score = 123 bits (136), Expect = 4e-22 Identities = 232/333 (70%), Gaps = 10/333 (3%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||||| |||||||| || |||||| | | ||| ||||||| | | | | | | Sbjct 400727 TGCACTGCGACTTTGCTTGCTTGCTCTTCTCA---CTCCTCAACAACCGCCCCAGCAAGG 400671 Query 1456512 -TGCC--CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 |||| |||| |||||| ||||| || ||||||||| | ||||| | | |||| Sbjct 400670 ATGCCGTCAAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGG 400611 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 | || || || || | ||||||||||||| | ||||||||||||||||||| | || Sbjct 400610 CTCTTCCCTGTGCTCTGCTGGGCATGAACGCCAAC-CTCATGTGCCAGTACATTG-AGTT 400553 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 |||||| ||||| |||||| ||| || ||| | ||| ||| | | |||| Sbjct 400552 TGTCGCTGACCGTCTGCTCTTGGCTCTTGGCAAC-ACCAAGGTATACAACTCCACAAACC 400494 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | ||| | |||||| |||||||| | |||||||||||||| || ||| || | Sbjct 400493 CCTTCGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTG 400434 Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780 | || || ||| ||||| || |||| |||| Sbjct 400433 TCGGTGACTACCAGAAGGCTGGTGTCATGGCCA 400401 Score = 93.3 bits (102), Expect = 6e-13 Identities = 119/158 (75%), Gaps = 11/158 (7%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||||||||| || ||||||| ||||| | |||||| |||||| Sbjct 400917 AAGAAGGCCGACTGGGCTCTGCGATGGATCACAGACAAGAA----CTCGACT-TTTGCCA 400863 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CC 1456237 || || || | ||| || || |||||||| ||||| ||| ||| || ||| || Sbjct 400862 CCCGCCTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGCTCCTT-TGCTTCC 400804 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||||||||| ||||| ||||||||||| Sbjct 400803 ATCTTTTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCT 400766 >seq20 Length=946066 Score = 100 bits (110), Expect = 4e-15 Identities = 207/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||||| |||||| ||| ||| ||||| || | ||||| ||||| || || Sbjct 121950 ACATACGACTACATGTCCCAGAAGTACTTCACACACGCTTCCCCCACACTCTTCAACGCA 121891 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || || |||| || || ||||| || | |||||||||| || || Sbjct 121890 GGCACACCTTCGCCTCAGATGTCATCTTGCTTCCTTATTGACATGAAGGAAGACAGCATT 121831 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 ||||| || || ||||| || ||| || || |||||||||||| | || ||||| || Sbjct 121830 GAGGGTATTTACGACACACTTAAGACCTGTGCACTCATCTCCAAGACTGCTGGCGGTATT 121771 Query 260063 GGTTT---TGCCGCA-CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGG 260118 ||| | || ||| | || | || ||| | ||| | ||| | | ||||| || || Sbjct 121770 GGTCTCAATG-TGCATCGCA---TCCGTGCCACTGGCTCATACATCGGAGGCACTAATGG 121715 Query 260119 CCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGA 260178 || ||||| || | || |||||||| |||| ||| |||| || || || ||||| Sbjct 121714 TACTTCAAACGGTCTCATTCCTATGCTTCGTGTTTACAACAACACTGCTCGTTATGTCGA 121655 Query 260179 CCAG 260182 ||| Sbjct 121654 TCAG 121651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177783421870656