Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq82 116 3e-21 >seq82 Length=92890 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || ||| || ||||||||||| |||| | ||||| |||| ||| Sbjct 12740 ACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGTTCGGCCGTCCTCC 12799 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||||||| || || || | ||||||||||| | ||| | | |||||| ||| | Sbjct 12800 AACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGG 12859 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | | | | ||||||||||| || || |||| ||||| || || Sbjct 12860 ATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACTTCCAATGTGATGGTCTTT 12919 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || |||||||| Sbjct 12920 CCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| |||| |||||| || | || || |||||||| || || || Sbjct 13504 TCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCGAGCTGCTTTCCGGCGAAG 13563 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| ||||||||||| | ||| | || |||||| ||| |||||| Sbjct 13564 ATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTT 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791977143040