Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq82 118 1e-21 seq20 91.5 1e-13 >seq82 Length=92890 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||| || || |||||||||||| | ||| | || || ||||| Sbjct 12974 TGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGC 13033 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || || || | |||||| || || || || || ||||| || |||||||| || Sbjct 13034 TTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 13093 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | |||||| || |||||||| || || ||||| || || || || Sbjct 13094 GACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTC 13153 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||| || |||||||||||||| Sbjct 13154 AGAGTCTTGACGAAAATTTGCAT 13176 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || |||||||||||||| |||||||||||| | |||| || Sbjct 13477 AGGCGAAGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGA 13536 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || || || ||||| |||||||| || || || ||||| || Sbjct 13537 CCATCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCC 13596 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | || || || || || || ||||| || Sbjct 13597 TTATCCTGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACCTCGAGGGTG 13656 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 13657 ATGGTCTTGCCGGT 13670 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || || || ||||| || ||||||||||| | ||| | Sbjct 13187 AGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGG 13246 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || || ||||| || ||||| || || || |||||||| Sbjct 13247 CCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCC 13306 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | || || || ||||| || ||||| || Sbjct 13307 TTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTG 13366 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 13367 ATGGTCTTGCCGGT 13380 >seq20 Length=946066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596 ||||||||| | || || ||| ||||| |||||| |||| || || || ||||| Sbjct 122040 ATCAACGGCAAGGTTGCTGAGCGACCACAACATATGCTGATGCGTGTTGCCGTAGGCATA 121981 Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656 || || ||||||||||| || | ||||| ||| | ||||| ||| | || Sbjct 121980 CATGGAGAAGACATTGAAAAGGCGATTGAAACATACGACTACATGTCCCAGAAGTACTTC 121921 Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGT 7716 || |||||||| ||||| | || ||| |||||| ||||||| |||| || || Sbjct 121920 ACACACGCTTCCCCCACACTCTTCAACGCAGGCACACCTTCGCCTCAGATGTCATCTTGC 121861 Query 7717 TTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCT 7766 || | | |||| ||||||||||| || || |||||| |||| || Sbjct 121860 TTCCTTATTGACATGAAGGAAGACAGCATTGAGGGTATTTACGACACACT 121811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396580565760