Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq20 187 3e-42 seq27 107 3e-18 >seq20 Length=946066 Score = 187 bits (206), Expect = 3e-42 Identities = 758/1180 (64%), Gaps = 26/1180 (2%) Strand=Plus/Plus Query 69276 AGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACA 69335 ||| || || || || || || ||||||| | | | ||| | || ||||| || || Sbjct 121171 AGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCA 121230 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 || ||| || ||| || || || || | ||| || ||||| |||| ||||| || Sbjct 121231 GAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATC 121290 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455 |||||| || || || || ||||||||||| |||||| |||| ||| | | ||| | Sbjct 121291 CTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAG 121350 Query 69456 GACCCTAGCATTTATTACGGTCTTGTA---ACGCTTCTCTTTTTCATATTGTGTATATAG 69512 | |||| | | |||| | ||| ||| || || | || || Sbjct 121351 CTTCTGAGCACGAA---CAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATGGTAGAG 121407 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 | ||| || ||||| || | || ||| | | ||||| || || || || | ||| Sbjct 121408 CTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAA 121467 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 || ||| || | | |||| || || ||||| || ||||| || ||||| || || || Sbjct 121468 TGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGC-AT 121526 Query 69633 A-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACT 69691 | |||||||| | || | | |||||| || || ||| || || || || || Sbjct 121527 AGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAAC 121586 Query 69692 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTC 69751 | | | ||||| ||||||||| || || || || || | | ||||| || || || | Sbjct 121587 CAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTTGTTGC 121646 Query 69752 CTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCAT 69811 | |||||||| | || | |||||||| || || || | ||||| ||||| | ||| | Sbjct 121647 CACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGT 121706 Query 69812 TAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATA 69871 | || ||||||| || || || || || | || || || | | | | Sbjct 121707 TTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGATGCGATGCACATTGA 121766 Query 69872 GACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATAC 69931 |||| || || || || | || ||||| || ||||| || | |||||| || |||| Sbjct 121767 GACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATAC 121826 Query 69932 CCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG---ATGTA 69988 |||| ||||| || || |||||| || ||| || || ||||| ||| | | || Sbjct 121827 CCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGT- 121885 Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAA-GCAGA 70047 || || || || || | ||| || || ||||| ||||| | || | || | | || Sbjct 121886 --GTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTCTGGGACATGTAG- 121942 Query 70048 TTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATC 70107 | |||||||||||| || ||| || || ||| || |||| || ||||||||| Sbjct 121943 TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATC 122002 Query 70108 AACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 | |||||| || ||||| || | || || || | |||||||| ||| Sbjct 122003 AGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGGAGGTATGAACGTTCA 122062 Query 70168 AGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACAGAAT 70225 || || || || ||||| | | ||| ||||| || | ||||| | ||| |||| | Sbjct 122063 AGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TCGCGGTCGTAGACAATGGCAGAGT 122120 Query 70226 TTAGTTTATC--CTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGA 70283 | || | ||| | | | ||| || || | || | |||||| || || | Sbjct 122121 TGAGCTCATCTGCGTGTGCCTGG--ACAATCTTGTAGACTGACTCTGAGATCATAGGCAA 122178 Query 70284 TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAG 70343 | | || || || || || || ||||| ||| | | || | || ||| || || | Sbjct 122179 TTGCTTGCCGTTCTTGGGGTTGACATAATTGTACAGGTCCGCGATGACAGCAGAGAACTG 122238 Query 70344 tttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTC 70403 || || || | |||||| | || || | ||| || | || || ||||| || ||||| Sbjct 122239 CTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCAATACGTGCGGCCAGAATGGCGTAGTC 122298 Query 70404 AGGATGTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGC 70442 ||||| |||| | || ||| |||||| | || || || Sbjct 122299 TGGATG-TGTGGTGGTCATGTATGCTGCTGTCTCGGCCGC 122337 >seq27 Length=812739 Score = 107 bits (118), Expect = 3e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| || ||||| || || | ||||||||| | | || | ||||| || || || Sbjct 400706 AAGCAAGCAAAGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 400765 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 || || ||||| || |||||||| ||||||||||| |||| |||||| || ||| ||| Sbjct 400766 AGACCGGGCATCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAG 400825 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||| || || || || || || |||||||| Sbjct 400826 AAGATACCCTCGACAGCAGCGAAGGCAACAAG 400857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906327128320