Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq20 295 8e-75 seq8 84.2 3e-11 >seq20 Length=946066 Score = 295 bits (326), Expect = 8e-75 Identities = 1127/1744 (65%), Gaps = 43/1744 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| ||||||||||| || | |||||| | | ||||| |||| | Sbjct 120293 CGGAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAGTG 120352 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGA 110480 | ||| ||| || || | |||| || ||||| | || |||| ||||||||| Sbjct 120353 ATCTTACCCATGGTGGGTTCCTTCATGTGGATGTTCAAAGACTGGGACT--GGTCAATGA 120410 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTG 110537 | || || | || ||||| | |||| | | || | || ||||| || | Sbjct 120411 AAGCACCACGGTCAGCGGCCATCTGGATGATAG---TGCGCTGAGAGATCTCCCAGACAG 120467 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTC--TGGATGGAACCCCC 110595 | ||||| || ||| | || || ||||| | || || |||| || || || || || Sbjct 120468 TCTTGTAGAGGTTTTTGGTCTCTTCAGGGATGT-TGGGA-ATTCGCTGAATCGAGCCGCC 120525 Query 110596 CGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 | | | ||| | | |||||| | || ||||||||||| || | |||||| || Sbjct 120526 CTCAGCAATGATGCGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTT 120585 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 || || |||||| | ||||| || || || | | ||||||||| Sbjct 120586 GAGCAGCCATGGGTTGACCACTTGGAACTCTCCGGCAAGCACACGGCGAGAGTAGATGTT 120645 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | ||||||||| ||||||||||| || || || | ||||| | || ||||| || || Sbjct 120646 CGATGTGTATGGCTCAAAGCATTCGTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGG 120705 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||| ||||| | | || ||| || | || | || || ||||| | Sbjct 120706 CATGGGTGCAACGAGTAGGGAGTTGCGGACGCCATGCTGGGCAATCTTCTCCTTCAATGA 120765 Query 110836 ATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 | ||||||| || || | | ||| | || |||| | || |||| ||| || Sbjct 120766 AGCCCAGTCCCAGA-GATCAGTGGGTGTGACAC-CCCAGAGATCGTACTGGAGCTGGCCC 120823 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 || || | || ||||| | | || || || | || | ||| || | || || Sbjct 120824 TGAGATACTGGTGAACCTTGGTATGTCTCGTACGGGCCAAGCTCTTTGGCAATGTCGCAA 120883 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 | || | ||||| || |||||||| ||||| || || | || ||| || Sbjct 120884 GATGAAGTGAGAGCAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGCTTCTTTGCC 120943 Query 111014 TCATCTGAATCAAATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACA 111070 || |||| ||||| | | || | |||| | || |||| || |||||||| ||| Sbjct 120944 TCGGCTGACTCAAAGG-GCAGT--CTCAAAGCGAGGAAAGCATCAGCAAGACCTTGTACA 121000 Query 111071 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAA 111130 || | |||||| || ||||| || | ||| || || |||||| ||||| Sbjct 121001 CCAAGACCAATGGGCCTGTGACGGAAGTTACTGCGGCGTGCCTCCTCAACAGGATAGTGG 121060 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 111190 || ||||||| || ||||| || |||| || |||| |||||||||||| Sbjct 121061 TTGACCTCAATGATCTTATTGAGATTGCGAGTGACAACCTGAGTGACTTCATGAAGTTTC 121120 Query 111191 TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAA 111250 | | || || || | || | | || | ||| | |||| || || | Sbjct 121121 TGGAAGTCGAACTCGCCACGCTTATAGTCAACGAAAGATGGCAAAGCGAGAGAGGCAAGG 121180 Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| ||||| |||||| | | || ||||| | ||| || || || | ||| ||| Sbjct 121181 TTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAGGTTAGAA 121240 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || || || || | ||||| ||||| |||||| ||||||| ||||||||||| ||| Sbjct 121241 CTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTATAGC 121300 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGC 111429 ||| |||| | || || || ||||| | | |||||| || | ||| | | || | || Sbjct 121301 ATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAGCTTCTG-AGC 121359 Query 111430 TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT-ACTTTGTGTAGAGGGCTTCAAACT 111488 | ||| | || | | || ||||| ||||| || || |||||| ||||||||| Sbjct 121360 ACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATG-GTAGAGCTCTTCAAACT 121418 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | || || |||| | || || || |||| || || ||||| | | ||||| || Sbjct 121419 CATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATTCAC 121478 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | |||| || |||||||||||||| ||||| ||||| |||| | |||||||| | Sbjct 121479 CGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGAAGAGATCGC 121538 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 ||| | ||||| | || || || || | |||||||| | | || ||| | Sbjct 121539 GGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAGACATCAG 121598 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGAT 111722 | ||||||||||| || |||| || | | ||| | ||| ||| | |||| Sbjct 121599 CATGCCATGGCTCGAGGTAGATGGCAAATGCACCC---GGGCGCTTGTTGCCACCCTGAT 121655 Query 111723 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 111782 ||||| || || ||| ||| | || |||||||| ||||| | ||| | ||| || Sbjct 121656 CGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGTTTGAAGTAC 121715 Query 111783 CATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 111840 |||| || || |||| || ||| | |||| | | ||| | | | ||||| Sbjct 121716 CATTAGTGCCTCCGATGTATGAG--CCAGTGGCACGGATGCGATGCACATTGAGACCAAT 121773 Query 111841 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 111900 ||| ||||| ||| ||||| | ||||| | |||| || | || ||||| | || Sbjct 121774 ACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTCAAT 121833 Query 111901 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 111960 ||| ||||| || | |||||||||||| |||||||| || ||||| || || Sbjct 121834 GCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCCTGC 121893 Query 111961 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 112019 |||||||| || || | ||||| |||| ||| | |||||||| | ||||||||| | Sbjct 121894 GTTGAAGAGTGTGGGGGAAGCGTGTGTGAA-GTACTTCTGGGACATGTAGTCGTATGTTT 121952 Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACT 112079 | | | ||||||||||| || || ||||| | || || ||||| | ||| | | Sbjct 121953 CAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCAGCATATGTT 122012 Query 112080 GTGG 112083 |||| Sbjct 122013 GTGG 122016 >seq8 Length=981941 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||| || || || ||||||| ||| || || || | || ||| || | |||| | Sbjct 473287 GCATCGATTTCGTCGATGAAGATAATGCAAGGAGTGCTCTT-GCGAGCATTGGCAAACAA 473229 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAG 11746 ||| || || | | ||||| ||||| ||||||||||||||||| | | | || | Sbjct 473228 ATCTCGCACACGTGATGCACCGACACCGACAAACATCTCCACAAACTCGGAACCGCTCA- 473170 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || || ||| || || ||| || || || ||||| ||||| |||||||| || Sbjct 473169 CGCT-GAAGAAAGGCACGCCTGACTCTCCAGCAGTGGCTTTTGCGAGAAGGGTCTTACCA 473111 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAAT 11864 |||||||| || | ||||| || || || |||||||| || || |||| | Sbjct 473110 GTACCTGGTGGGCCAGAGAGAATAGCACCGCGAGGGATCTTCGCGCCTAGCTTCTGGA-- 473053 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAA 11924 ||| |||| | |||||| || | |||| ||| | ||| | || || |||| | Sbjct 473052 ATCGACCGGGCTCCTTGAGGAAGGCGACAAACTCCATGATTTCTTGCTTTGCTTCGTCCA 472993 Query 11925 TCCCCTCAACATCA 11938 | || |||||||| Sbjct 472992 TACCGGCAACATCA 472979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029739084800