Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq20 306 5e-78 seq8 82.4 9e-11 >seq20 Length=946066 Score = 306 bits (338), Expect = 5e-78 Identities = 1141/1754 (65%), Gaps = 61/1754 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 120293 CGGAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAAGTG 120352 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | ||| | ||| || | |||| || ||||| | ||||| || || ||||| Sbjct 120353 ATCTTACCCATGGTGGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATGAAA 120412 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || || || || ||||| | || | | | ||| ||||| |||||| || Sbjct 120413 GCACCACGGTCAGCGGCCATCTGGATGATAGTGCGCTGAGAGATCTCCCAGACAGTCTTG 120472 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 |||||||| || | || || ||||| | || | | || ||| | ||||| | Sbjct 120473 TAGAGGTTTTTGGTCTCTTCAGGGATGTTGGGAAT----TCGCTGAATCGAGCCGCCCTC 120528 Query 118077 ACCA----TGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 | || || | | |||||| | || ||||||||||| || | ||| |||| | Sbjct 120529 AGCAATGATGCGGTTCTTCATGTTCTCAGACCAGAGACCCATGTCGACGAGGTCCTTGAG 120588 Query 118133 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATT 118189 || ||| | |||| || ||||| || || || || | ||| ||||| || Sbjct 120589 CAGCCATGGGT--TGACCACTTGGAACTCTCCGGCAAGCACACGGCG-AGAGTAGATGTT 120645 Query 118190 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 118249 | ||||||||||||||||| || ||||| || | ||||| | ||| ||||| || || Sbjct 120646 CGATGTGTATGGCTCAAAGCATTCGTTGTTGCCGAGAATTTGAGATGTTGAGGCAGTAGG 120705 Query 118250 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGC 118309 ||||||||| | ||| ||| ||| |||| || | | ||| ||||| | | Sbjct 120706 CATGGGTGCAACGAGTAGGGAGTTGCGGACGCCATGCTGGGCAATCTTCTCCTTCAATGA 120765 Query 118310 GTCCCAGTCGTAGTTGAGCTTTG--TCTCCCCCTGCCACATATCAAACTGGAGGATACCT 118367 ||||||| || || | || | | | | ||| | ||| ||||||| || Sbjct 120766 AGCCCAGTCCCAGA-GATCAGTGGGTGTGACACC-CCAGAGATCGTACTGGAGCTGGCCC 120823 Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCG 118424 || || |||| || || | ||||||| || ||||| || ||| | |||| ||| Sbjct 120824 TGAGATACTGGTGAACCTTGGTATGTCTCGTACGGGCC---AAGCTCTTTGGCAATGTCG 120880 Query 118425 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484 | | ||| || ||||| || || ||||| || || || || | ||| Sbjct 120881 CAAGATGAAGTGAGAGCAGCGTGGTAAATGGTTTCGAAGATCTGAATGTTGAGCTTCTTT 120940 Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA---ATAAATACATCCGCGAGACCTTGG 118541 |||||| | || ||||| | |||| |||| | || |||| || |||||||| Sbjct 120941 GCCTCGGCTGACTCAAAGGGCAGTCT---CAAAGCGAGGAAAGCATCAGCAAGACCTTGT 120997 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGAT 118599 ||||| || ||||| || | || | | ||| || | || || ||| || |||| Sbjct 120998 ACACCAAGACCAATGGGCCTGTGACGGAAGTTA--CTGCGGCGTGCCTCCTCAACAGGAT 121055 Query 118600 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 118659 | || || || | | |||| ||||| |||||||||| |||| |||||||| Sbjct 121056 AGTGGTTGACCTCAATGATCTTATTGAGATTGCGAGTGACAACCTGAGTGACTTCATGAA 121115 Query 118660 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATT 118715 | || | | | || || || | | ||| || | || || | || || |||| Sbjct 121116 GTTTCTGGAAGTCGAACTCGCCA--CGCTT-ATAGTCA-ACGAAAGATGGCAAAGCGAGA 121171 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || || || || || |||| |||||| | |||| ||||| ||||| || ||||| Sbjct 121172 GAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAATCTCAGTGCAG 121231 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| ||||| ||||| || | |||||| || || ||| |||| || |||||| Sbjct 121232 AGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCC 121291 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 118894 ||||| |||||| | || | || || || || || | || |||||| || | ||||| | Sbjct 121292 TTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGCATACCAGAGC 121351 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGT-ACTTTGTGTAGAGGG 118953 || | ||| | ||||| || | | || ||||| ||||| || || |||||| Sbjct 121352 TTCTG-AGCACGAACAGTCTCGCGGCCACGGCCCTCGCGCTCGTAACGATG-GTAGAGCT 121409 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 |||||||||| || || | | || | || || || |||| | |||||||| | | Sbjct 121410 CTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTCGTTGGGGCAGAACAATG 121469 Query 119014 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 ||||| ||| ||||| || ||||||||||| || |||||||||||||| || ||| Sbjct 121470 TCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGGGATCCAGAGGGCATAGA 121529 Query 119074 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133 ||||||| || ||| ||||||| | || ||||| |||| || | || | | Sbjct 121530 AGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCGCAGGTCAAGGAAACCAA 121589 Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC-----CTTACGACGAC 119187 || ||| || ||||| || || ||||| | || | || |||| ||| | | | Sbjct 121590 AGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACCCGGGCGCTT--GTTG-C 121646 Query 119188 CAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCAT 119247 || |||| | ||||| | |||||| ||| | ||||||||||| ||||||| ||| | Sbjct 121647 CACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCATAGGAATGAGACCGT 121706 Query 119248 CGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTG 119305 || ||||| || || |||| || ||| | | |||| | || || | | Sbjct 121707 TTGAAGTACCATTAGTGCCTCCGATGTATGAGCC--AGTGGCACGGATGCGATGCACATT 121764 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 | ||||||||| || || ||| ||||| | || || | | || || |||| || Sbjct 121765 GAGACCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTAAGTGTGTCGTAAAT 121824 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGG 119425 || || || ||| |||| | | || |||||||| ||||| |||||| || Sbjct 121825 ACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGACATCTGAGGCGAAGG 121884 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGT 119484 ||| || ||||||||||| || || | ||||| |||| ||| | |||||||| | || Sbjct 121885 TGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAA-GTACTTCTGGGACATGTAGT 121943 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 |||| || || | | ||||||||| || || || || | | || ||||| | Sbjct 121944 CGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTACGGCAACACGCATCA 122003 Query 119545 ACATGTATTGGGGT 119558 ||| | ||| ||| Sbjct 122004 GCATATGTTGTGGT 122017 >seq8 Length=981941 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAACTTCAAAGAT 14301 || || ||||| |||||||| | || || || || | || || ||| |||| | Sbjct 473287 GCATCGATTTCGTCGATGAAGATAATGCAAGGAGTGCTCTTG-CGAGCATTGGCAAACAA 473229 Query 14302 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG-GAAC 14360 ||||||||| | ||||||||||| ||||||||||||||||| | || || || Sbjct 473228 ATCTCGCACACGTGATGCACCGACACCGACAAACATCTCCACAAACTCGGAACCGCTCAC 473169 Query 14361 ATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 | || ||| || ||| || || || || ||||| ||||| |||||||| || | Sbjct 473168 GCT-GAAGAAAGGCACGCCTGACTCTCCAGCAGTGGCTTTTGCGAGAAGGGTCTTACCAG 473110 Query 14421 TCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 | |||||| || | ||||| ||||| || |||||| | || || Sbjct 473109 TACCTGGTGGGCCAGAGAGAATAGCACCGCGAGGGATCTTCGCGCC 473064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432973633280