Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq20 242 4e-59 seq27 111 2e-19 seq8 93.3 5e-14 seq1 87.8 2e-12 >seq20 Length=946066 Score = 242 bits (268), Expect = 4e-59 Identities = 1126/1753 (64%), Gaps = 43/1753 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| | ||||| || ||| | || || ||||| ||||||||||| | Sbjct 122016 CCACAACATATGCTGATGCGTGTTGCCGTAGGCATACATGGAGAAGACATTGAAAAGGCG 121957 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | || ||||||||| | |||||||| | ||| |||| ||||| | || || ||||| Sbjct 121956 ATTGAAACATACGACTACATGTCCCAGAAGTAC-TTCACACACGCTTCCCCCACACTCTT 121898 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || ||||| || || ||||| |||||||||||| | || ||||| || Sbjct 121897 CAACGCAGGCACACCTTCGCCTCAGATGTCATCTTGCTTCCTTATTGACATGAAGGAAGA 121838 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | ||||| || | || |||| | ||||| | ||||| ||| ||||| Sbjct 121837 CAGCATTGAGGGTATTTACGACACACTTAAGACCTGTGCACTCATCTCCAAGACTGCTGG 121778 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 |||||||| | | | ||| | | |||| | ||| || |||| || || Sbjct 121777 CGGTATTGGTCTCAATGTGCATCGCATCCGTGCCACTGG--CTCATACATCGGAGGCACT 121720 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| ||| | ||| | ||||| |||||||| || | ||| ||| || || ||| Sbjct 121719 AATGGTACTTCAAACGGTCTCATTCCTATGCTTCGTGTTTACAACAACACTGCTCGTTAT 121660 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || |||| | ||| ||| | ||| | | || |||| || ||||||||| Sbjct 121659 GTCGATCAGGGTGGCAACAAGCGCCC---GGGTGCATTTGCCATCTACCTCGAGCCATGG 121603 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 || || ||| || | | |||||||| |||| || || || | || || | || Sbjct 121602 CATGCTGATGTCTTTGGTTTCCTTGACCTGCGCAAGAATCACGGCAAGGAAGAAGTTCGT 121543 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 |||||||||||||| || |||||||| |||||||| ||||||||| | || ||||| Sbjct 121542 GCCCGCGATCTCTTCTATGCCCTCTGGATCCCAGATCTTTTCATGAAGCGTGTCCAGGAG 121483 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || | ||| | | || || || || |||| ||||| || | || | | || Sbjct 121482 AACGGTGAATGGACATTGTTCTGCCCCAACGAGGCCCCTGGCCTTGCTGACGTCTATGGC 121423 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAG-TACGAGGAAGAAGGTCG-GGCGACTGCGACGG 104870 || |||||||||| || ||| || | |||||| || || || ||| | | ||| | Sbjct 121422 GATGAGTTTGAAGAGCTCTAC-CATCGTTACGAGCGCGAGGGCCGTGGCCGC-GAGACTG 121365 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | ||| | || | | ||| | || |||||| || |||| || || ||||||| || Sbjct 121364 TTCGTGCT-CAGAAGCTCTGGTATGCCATTCTCGAGGCTCAGACTGAAACTGGTAACCCC 121306 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| || ||||| ||| ||||| || || ||||| | ||| ||| Sbjct 121305 TTCATGCTATACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATC 121246 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 ||||| || ||||| || || || | || | ||| | |||||| ||||| Sbjct 121245 CGCAGTTCTAACCTCTGCACTGAGATTATTGAGTATACTGCTCCCGATGAGGTTGCTGTC 121186 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TTTGA 105108 || ||||| || || ||||| | || | || || | | | | | | || || Sbjct 121185 TGCAACCTTGCCTCTCTCGCTTTGCCATCTTTCGTTGA-CTATAAGCGTGGCGAGTTCGA 121127 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | ||||| || ||||| || | |||||| || || || | | ||||| Sbjct 121126 CTTCCAGAAACTTCATGAAGTCACTCAGGTTGTCACTCGCAATCTCAATAAGATCATTGA 121067 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 || || || |||||| || || ||| | | ||| | || ||||| Sbjct 121066 GGTCAACCACTATCCTGTTGAGGAGGCACGCCGCAGTAACTTCCGTCACAGGCCCATTGG 121007 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCG 105287 ||| ||||| || ||||| || |||| ||| | ||||| | | | ||||| || | Sbjct 121006 TCTTGGTGTACAAGGTCTTGCTGATGCTTTCCTCGCTTTG-AGACTGCCCTTTGAGTCAG 120948 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || ||| | |||| | || || || ||||| || ||||| ||||| Sbjct 120947 CCGAGGCAAAGAAGCTCAACATTCAGATCTTCGAAACCATTTACCACGCTGCTCTCACTT 120888 Query 105348 CGAGTTCAGA-GTTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 | || || ||| || || | | ||| || || || || | | ||||| |||| Sbjct 120887 CATCTTGCGACATTGCCAAAGAGCT--TGGCCCGTACGAGACATACCAAGGTTCACCAGT 120830 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGAC 105463 || || || ||| || | ||| | |||| || | ||| | || || || ||| Sbjct 120829 ATCTCAGGGCCAGCTCCAGTACGATCTCTGGG-GTGTCACACCCA-CTGATCTCTGGGAC 120772 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 |||| | | ||||| || || | || | || ||| || ||| | || Sbjct 120771 TGGGCTTCATTGAAGGAGAAGATTGCCCAGCATGGCGTCCGCAACTCCCTACTCGTTGCA 120712 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| || ||||| || | ||||| | || || || ||||||||||| || ||| Sbjct 120711 CCCATGCCTACTGCCTCAACATCTCAAATTCTCGGCAACAACGAATGCTTTGAGCCATAC 120652 Query 105584 ACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642 || |||||||||| ||| | | || || |||||||| | |||||| || Sbjct 120651 ACATCGAACATCTACTCT-CGCCGTGTGCTTGCCGGAGAGTTCCAAGTGGTCAAC--CCA 120595 Query 105643 T--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 105700 | || | | |||||| || || ||||||||||| || | |||||| | | ||| Sbjct 120594 TGGCTGCTCAAGGACCTCGTCGACATGGGTCTCTGGTCTGAGAACATGAAGAACCGCATC 120535 Query 105701 GTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTG 105760 | | ||| || || ||||| ||| | || || | || | || || | Sbjct 120534 ATTGCTGAGGGCGGCTCGATTCAGCGAATTCCCAACATCCCTGAAGAGACCAAAAACCTC 120475 Query 105761 TACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 105820 ||| || || ||||| ||| | | |||| | |||||||| || |||||| Sbjct 120474 TACAAGACTGTCTGGGAGATCTCTCAGCGCACTATCATCCAGATGGCCGCTGACCGTGGT 120415 Query 105821 CGCTTCATTGATCAAAGTCAAAG--TATGAATCTCTTCATGGAAAGTCCAACGATGTCCA 105878 |||||||| | |||| || | |||| || |||| | || || ||| | Sbjct 120414 GCTTTCATTGACC--AGTCCCAGTCTTTGAACATCCACATGAAGGAACCCACCATGGGTA 120357 Query 105879 AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938 || || |||| |||||| | | |||||| |||||||| || || ||||| || | Sbjct 120356 AGATCACTTCCATGCACTTTGCTGGATGGAAGCTTGGTCTCAAGACCGGCATGTACTATC 120297 Query 105939 TCCGATCTAAGGC 105951 |||| ||| ||| Sbjct 120296 TCCGTACTATGGC 120284 >seq27 Length=812739 Score = 111 bits (122), Expect = 2e-19 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTG-ATACAAAGT 94789 ||||||||| || || | ||||| || || |||||| || ||| | | |||| Sbjct 400936 AACAGTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTGCGATGGATCACAGACAAGAA 400877 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | || | ||||| || || | || || || ||| ||||||||||||||| || Sbjct 400876 CTCGA-CTTTTGCCACCCGCCTTGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTG 400818 Query 94850 GTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 | ||||| ||| | || | ||||||||||||||| || || ||||| ||||| |||| Sbjct 400817 GCTCCTT-TGCTTCCATCTTTTGGCTCAAGAAGCGTGGCCTGATGCCCGGTCTGACCTTC 400759 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| ||||||||||| ||||| | ||| || ||||| Sbjct 400758 TCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACTGCGACTTTGC 400712 >seq8 Length=981941 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/415 (66%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||| ||||| ||||| || | |||||| | || | || || | ||||| || | || Sbjct 473468 ATCGAAGCGGCCTGGCCGCATGAGCGCCTTGTCCAAGACGTCCGCTCGATTGGTACCAGC 473409 Query 9586 GATGACAACAATACCTGTTTCATTATCA--AAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | ||||||| | |||| || | ||||| |||||||||||||| | || || Sbjct 473408 AAGCACAACAA--CTTGTTCGGTTGTGTTGAAACCGTCCATCTCTGTCAAGATCTGATTC 473351 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA--GCACTGCGTTGCTTTCCCA 9701 | ||| ||| || || || || | ||||||| | |||| ||| | || Sbjct 473350 AGTGTTGCTTCACGCTCGTCGTTACC------ACCACCAAAGTTCTGCTTTGATCGAGCA 473297 Query 9702 CG-------GCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGAC 9753 || ||||| || || || ||||||| ||||| || || | || |||||| Sbjct 473296 CGTCCAATAGCATCGATTTCGTCGATGAAGATAATGCAAGGAGTGCTCTT-GCGAGCATT 473238 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 |||| | ||| || ||||| || || ||||| ||||||||||||||||| | | Sbjct 473237 GGCAAACAAATCTCGCACACGTGATGCACCGACACCGACAAACATCTCCACAAACTCGGA 473178 Query 9814 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 || || | || ||| || || || || || ||| ||||| |||||||| | Sbjct 473177 ACCGCTCACGCT-GAAGAAAGGCACGCCTGACTCTCCAGCAGTGGCTTTTGCGAGAAGGG 473119 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||||| |||||||| || | ||| | ||||| || || ||||| ||||| Sbjct 473118 TCTTACCAGTACCTGGTGGGCCAGAGAGAATAGCACCGCGAGGGATCTTCGCGCC 473064 >seq1 Length=650390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 194/290 (67%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 169173 CCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAA 169232 ||||||| ||| |||||| | ||| ||| ||||||||||||||| | || || || | Sbjct 364224 CCTTGATATGGCTACCGTCATGATCTTGATCAGTCATGATCATGAGATGGCCGTATCGTA 364165 Query 169233 GC---------TCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCT 169283 | || |||||| || || ||||| || ||||| |||| | ||||| Sbjct 364164 GGCTCTTGAGGTCTGAAACAG--TG-TACTCCTTCTTGTGCTGAAGCCCCATAAACTTCT 364108 Query 169284 TGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCT 169343 ||| || | | |||||| || ||| || ||||| ||||||||| |||||| Sbjct 364107 TGATATTCTGAATCTCTTGATTCTTCATGATTTGGTCGACAGTGGCATCGCGCACATTCA 364048 Query 169344 TACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCG 169403 ||| |||||||| |||||||||||| | ||| || ||||||| | || | Sbjct 364047 GCAGCTTACCACGAAGTGGGAAGACACCGAACAAATCCTGATTGACGACGGCACGTCCAG 363988 Query 169404 CGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACAT 169453 | | || || | ||||| |||||||| |||| || || || ||| Sbjct 363987 CCAAAGCCAGTACACTAGCCGACTCACCCTCAGTGAGAATCAGGGTGCAT 363938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258700261120