Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 201 3e-46 seq82 141 3e-28 seq13 138 3e-27 seq52 87.8 5e-12 seq26 84.2 7e-11 >seq1 Length=650390 Score = 201 bits (222), Expect = 3e-46 Identities = 922/1454 (63%), Gaps = 24/1454 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || ||||| | ||||| || || |||||||| | | | | | |||| | Sbjct 270265 GCGATCGGTATCGACCTGGGTACCACGTACTCTTGTGTCGGTATCTTCCGTGATGACAGG 270324 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 ||||||| || || || || || |||||| |||| || || || | |||||| || ||| Sbjct 270325 ATAGAAATCATCGCCAACGACCAGGGTAACCGAACCACCCCTTCGTTCGTTGCCTTCACC 270384 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | || || || || || || || || | || || || || Sbjct 270385 GATACCGAGCGTCTCATCGGAGACTCGGCCAAGAACCAGGTCGCCATGAACCCCGCCAAC 270444 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACA 349434 || || || || || ||||| || || || | | || | ||| | || || Sbjct 270445 ACAGTCTTCGACGCAAAGCGCCTGATCGGCCGCAAGTTCGCCGACGCTGAGGTC----CA 270500 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || ||||| || || | ||||| || | ||| || || | || Sbjct 270501 GGCTGATATGAAGCATTTCCCCTTCAAGATTGTTGACAAGGCCGGC---AAGCCTGTCAT 270557 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||| || | || || || | || || ||| || || || ||||| ||||| Sbjct 270558 CCAGGTCGAGTTCAAGGGCGAGGAGAAGACCTTCACACCTGAGGAGATCTCATCCATGGT 270617 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 || || |||| ||| | ||| || | || | |||| ||| || | | ||||| Sbjct 270618 CTTGACCAAGATGAGGGAGACTGCCGAGTCCTACCTCGGTGGAACCGTCAACAACGCTGT 270677 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 ||||||| || ||||| || || || |||||||| || || || |||||||| Sbjct 270678 CGTTACTGTTCCCGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGATGCTGGTCT 270737 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || | || || || | || || || || ||||| ||||| || || || || Sbjct 270738 CATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCTGCCGCTATCGCCTA 270797 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | || | || || | || || || ||||| |||||||| Sbjct 270798 CGGTCTCGACAAGAAGACCCAGGGTGAGCGCAACGTCCTCATCTTCGATTTGGGTGGTGG 270857 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 270858 TACCTTCGATGTTTCCCTTCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGC 270917 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||||| || || | ||||| || || || || || | ||||| || || | Sbjct 270918 CGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACAGACTCGTCAACCACTTCACAAC 270977 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCC 349973 || || || || |||| ||| ||| | | || || | || | || || | Sbjct 270978 TGAGTTCAAACG-AAAGCACAAACGTGACCTCACAACCAACGCTCGTGCCCTTCGCCGTC 271036 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTG 350033 | |||| || || || ||||| ||||| || | || || || | || ||||| || | Sbjct 271037 TCCGAACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCTCAGACCTCCATCG 271096 Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 | || || ||||| || || | || |||| | || || || |||||||| || | Sbjct 271097 AGATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGTTTCG 271156 Query 350094 AAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAG 350153 | || | || |||||| || | | || ||||| || || || || | | Sbjct 271157 AGGAGCTCTGCCAGGATCTCTTCCGCTCCACCATGGAGCCCGTTGAGCGTGTCCTCCGTG 271216 Query 350154 ATGC-AAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212 |||| || | || | | || | | | || | || || || ||||||||||| ||| Sbjct 271217 ATGCTAAGATTGACAAGTCCTCCG-TCCACGAGATCGTCTTGGTCGGTGGTTCTACCCGT 271275 Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCA 350272 || || || || || || | | || || || || || ||||| || || | || Sbjct 271276 ATCCCCAAGGTCCAGAAGATGGTCTCCGACTTCTTCAACGGCAAGGAGCCCAACAAGTCC 271335 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGA 350332 || || || ||||| || || || || |||||||| || ||||| | || || ||||| Sbjct 271336 ATCAACCCCGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAGGCCGCCATCTTGTCTGGT 271395 Query 350333 AATA------AGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCG 350386 ||| | || | | || |||| || || || ||||| | || || || Sbjct 271396 GATACCTCCTCCAAGTCCACCAGCGA-GATC--TTGCTTCTCGATGTCGCGCCGCTCTCC 271452 Query 350387 CTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTA 350446 | || | || || |||||| || ||||||| || || | || | || | Sbjct 271453 ATCGGTATTGAGACCGCTGGTGGTGTCATGACTGCGCTCATCAAGCGTAACACCACCATC 271512 Query 350447 CCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATT 350506 || || || |||||| | || || || || || || ||||| | || || Sbjct 271513 CCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCAGCGACAACCAGCCCGGTGTGCTCATC 271572 Query 350507 CAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACC 350566 || || | ||||| |||||||| |||||||| || ||||| || || | || Sbjct 271573 CAGGTCTACGAAGGCGAACGTGCCCGCACTAAGGACAATAACTTGCTCGGCAAGTTCGAG 271632 Query 350567 CTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATT 350626 || | | ||||| || |||| | || ||||||||||| || ||| | |||||| | Sbjct 271633 CTTACCGGTATTCCCCCTGCGCCTCGTGGTGTTCCTCAGATCGAGGTCACCTTCGATGTC 271692 Query 350627 GATTCAAATGGTAT 350640 ||| | || ||||| Sbjct 271693 GATGCCAACGGTAT 271706 >seq82 Length=92890 Score = 141 bits (156), Expect = 3e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| ||||| |||||||| || || || || | Sbjct 13170 TTTGCATACCACCACGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGT 13229 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || ||||| || || ||||| || ||||| | |||||||| | Sbjct 13230 AGTCCGACAGGGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGT 13289 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| |||||||| || || | || || || || || | ||| || | Sbjct 13290 CAGGAGGAATGCCTTCCTTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGG 13349 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| ||||| ||||| | ||||| ||||| Sbjct 13350 ATTCGACTTCGAGTGTGATGGTCTTGCCGGT 13380 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||| || || || ||||| || || || || || Sbjct 12946 CATACCACCACGCAGGCGGAGTACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTC 13005 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||||||||| || || ||||| ||||| ||||| || || || || Sbjct 13006 GGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGG 13065 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || || ||||| || | || || || || || | || |||| ||| Sbjct 13066 AGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATTGTGTCCGATGATTC 13125 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| |||||| || || || || || || ||||| ||||| Sbjct 13126 CACCTCCAGGGTAATTGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 >seq13 Length=1064643 Score = 138 bits (152), Expect = 3e-27 Identities = 266/388 (69%), Gaps = 7/388 (2%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590 |||||||||||||| | ||||| | | || |||||||| |||||||| ||| || | Sbjct 989258 CCCGAAGAAATTTCGGCCATGGTCCTCGGCAAGATGAAGGAGATTGCTGAGAGC-TACCT 989200 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 ||||| | || | | || ||| |||| || || ||||| || || || || ||||| Sbjct 989199 TGGTGAGCCCGTTAAGAACGCCGTTGTTACCGTCCCCGCCTACTTCAACGACGCTCAGCG 989140 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | | || || || || ||||| | || || || | || ||||| | | | || || Sbjct 989139 TGCCGCCACCAAGGACGCTGGAACTATCGCTGGTCTCAACGTTCTCCGTGTTGTCAACGA 989080 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766 || || ||||| || | || || || | || || | ||| ||||| | Sbjct 989079 GCCTACCGCTGCCGCTCTGGCTTACGGTTTGGACAAGGTCGCCGAC-AAGAAGGAGCGCC 989021 Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826 | |||| | | ||| | |||||||||||||| ||||| || | || || | || | Sbjct 989020 AGGTTCTCGTCTACGATCTTGGTGGTGGTACTTTCGATGTCTCCATCCTCACCATCGAGG 988961 Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886 |||| |||| || || | |||||||||||||||| ||||||||||| |||||||| | Sbjct 988960 AGGGCGTTTTCGAGGTCCAGTCAACTGCTGGTGATACTCATCTTGGTGGTGAAGATTTCG 988901 Query 349887 ATAATCGTCTCGTTTCGCATTTTGTTAA 349914 | || ||| || || || ||||| || Sbjct 988900 ACAACCGTGTCATTAACCACTTTGTCAA 988873 >seq52 Length=336907 Score = 87.8 bits (96), Expect = 5e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||| ||||| | | || || | || ||||| ||||| || || || || || || Sbjct 188358 ATACCGCCACGGAGACGGAGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 188417 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || ||||||||||| || || || ||||| || Sbjct 188418 GACAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCCGGG 188477 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATC 140668 ||||| || || || |||||||| || ||| || ||||| || Sbjct 188478 GGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTCACATTGTC 188518 >seq26 Length=862723 Score = 84.2 bits (92), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | || || || ||||| ||||||| ||| ||||||| ||||||||||| Sbjct 19084 ATTTCCTTAAGACGCGGTACACCTAGTGTAACGTTC---TTAGATGATACACCAGCAAAA 19028 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 || || || || ||||| | || || | || |||||||| || || || |||| ||| Sbjct 19027 TGAAACGTGTTCAGAGTCATCTGCGTGGCTGGTTCACCAATGGATTGGGCAGCAAGAACA 18968 Query 377566 CCAACCATTTCTCCAGG 377582 |||||||| || || || Sbjct 18967 CCAACCATCTCCCCTGG 18951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248808711264