Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq20 181 1e-40 seq27 109 6e-19 seq1 89.7 6e-13 >seq20 Length=946066 Score = 181 bits (200), Expect = 1e-40 Identities = 467/705 (66%), Gaps = 6/705 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| || ||||||| ||| ||| |||||||| || ||||| | || || || ||||| Sbjct 121954 TGAAACATACGACTACATGTCCCAGAAGTACTTCACACACGCTTCCCCCACACTCTTCAA 121895 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || | ||||||||||| |||||||| | | |||||||| ||| Sbjct 121894 CGCAGGCACACCTTCGCCTCAGATGTCATCTTGCTTCCTTATTGACATGAAGGAAGACAG 121835 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || || ||||| || || ||| ||||| | |||||||||| | || || Sbjct 121834 CATTGAGGGTATTTACGACACACTTAAGACCTGTGCACTCATCTCCAAGACTGCTGGCGG 121775 Query 53422 TATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| ||| || | ||| ||| | ||||||| | ||| || ||| || || || Sbjct 121774 TATTGGTCTCAATGTGCATCGCA--TCCGTGCCACTGGCTCATACATCGGAGGCACTAAT 121717 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 || | | || || | |||||||| || || | ||||||||| || || || ||| Sbjct 121716 GGTACTTCAAACGGTCTCATTCCTATGCTTCGTGTTTACAACAACACTGCTCGTTATGTC 121657 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 | |||||||| |||||| ||| | || ||||||||||||||||| ||||| || Sbjct 121656 GATCAGGGTGGCAACAAGCGCCCGGGTGCATTTGCCATCTACCTCGAGCCATGGCATGCT 121597 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 || | | | || || || ||||| |||||| || | ||||| | || ||| Sbjct 121596 GATGTCTTTGGTTTCCTTGACCTGCGCAAGAATCACGGCAAGGAAGAAGTTCGTGCCCGC 121537 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 || || || || || ||||| || || || |||||| | || || || ||| Sbjct 121536 GATCTCTTCTATGCCCTCTGGATCCCAGATCTTTTCATGAAGCGTGTCCAGGAGAACGGT 121477 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 || ||| || | ||||| |||||| ||| ||||| | ||||| || || ||| Sbjct 121476 GAATGGACATTGTTCTGCCCCAACGAGGCCCCTGGCCTTGCTGACGTCTATGGCGATGAG 121417 Query 53780 TTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 ||| | ||| | || | |||| || | ||||||| | ||| || || Sbjct 121416 TTTGAAGAGCTCTACCATCGTTACG-AGCGCGAGGGCCGTGGCCGCGAGACTGTTCGTGC 121358 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 | || | ||| |||| || ||| || ||| || || || | || | |||| Sbjct 121357 TCAGAAGCTCTGGTATGCCATTCTCGAGGCTCAGACTGAAACTGGTAACCCCTTCATGCT 121298 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||||||| | |||| ||||||||||||||||||| |||| Sbjct 121297 ATACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACCTCGG 121253 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || |||||||| | ||| | | | || | ||| ||||| |||||||| | Sbjct 120469 GACTGTCTGGGAGATCTCTCAGCGCACTATCATCCAGATGGCCGCTGACCGTGGTGCTTT 120410 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 ||| ||||||||||||||| |||||||| |||| || | || | ||| ||| | | Sbjct 120409 CATTGACCAGTCCCAGTCTTTGAACATCCACATGAAGGAACCCACCATGGGTAAGATCAC 120350 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||||||| || |||||| || |||||||| || ||||||||||| || || Sbjct 120349 TTCCATGCACTTTGCTGGATGGAAGCTTGGTCTCAAGACCGGCATGTACTATCTCCGTAC 120290 >seq27 Length=812739 Score = 109 bits (120), Expect = 6e-19 Identities = 295/445 (66%), Gaps = 16/445 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| ||||| ||||||||||| || | | ||||||||||||||| Sbjct 400424 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTCTCCATG 400483 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||||||| ||||| | | ||| | | || | | |||| | |||| ||| Sbjct 400484 AAGTCGAAGGGGTTTGTGGAGTTGTATACCTTGG--TGTTGCCAA---GAGCCAAGAGCA 400538 Query 74581 GA---TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 || || || ||||| | ||||||||| ||| || | |||||| | || Sbjct 400539 GACGGTCAGCGACAAACTCAATGTACTGGCACATGAGGTTGGCGTTCATGCCCAGCAGAG 400598 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTG--GACAA 74694 || || || |||||||| | ||||| ||| | ||| |||| || || || | Sbjct 400599 CACAGGGAAGAGCCTCGGTAAGGAACTCCTGCTCGATCTCCACAGCCTCAGTGATGATAG 400658 Query 74695 TCTTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAA 74754 |||| || ||| |||| || | | ||| | ||| | ||| |||| Sbjct 400659 CCTTGACGGCATCCTTGCTGGGGCGGTTGT---TGAGGAGTGAGAAGAGCAAGCAAGCAA 400715 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| ||||| | || | || || || || | || || |||| Sbjct 400716 AGTCGCAGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 400775 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || ||||||||||| | ||||||||||| | ||||| |||||||||||||| || | Sbjct 400776 TCAGGCCACGCTTCTTGAGCCAAAAGATGGAAGCAAAGGAGCCACTGAAGAAGATACCCT 400835 Query 74875 CGACACACGCAAAGGCGACAAGGCG 74899 ||||| || ||||| |||||||| Sbjct 400836 CGACAGCAGCGAAGGCAACAAGGCG 400860 >seq1 Length=650390 Score = 89.7 bits (98), Expect = 6e-13 Identities = 205/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAG-CAAGACGCGTACC 117357 |||||||| |||| || | | ||| |||||||| ||||| |||| |||| ||| Sbjct 364984 AGGCGAGTATAAATATACCTGGCGCTGGCAGCATCGAAACCACCCTTCAAG-CGCGAACC 364926 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| | ||||| || |||||| || | |||||| | ||| ||||| ||||| ||||| Sbjct 364925 GAAGTTACCACTAGGTTCCAAGTAATTGATGTTGTTAGAGCCGACAAAATTTTGTGCCAA 364866 Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC-GCCA 117476 |||||| || || || | ||| ||||| || |||| | || | ||| | | Sbjct 364865 ACCGACAATAGTGCCCTGCATCGACGCTTCACCGTGAAGATAATCTGTG-GATCCAGAAA 364807 Query 117477 CGTAGCCCGCCAGCTGAGCCACCTTCATGTCTG-ACGTCAGGTTCTTCTTGAGGCAGGCA 117535 || | || |||| || | | || || | ||| ||| ||| || || |||| Sbjct 364806 CGGAACCAGCCAACTCAACGACTTTGACATCTTTACGAATATTTCGTCG-GAAACAGGTG 364748 Query 117536 TAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGC 117592 || || ||||||||||||| ||||| || |||||| ||| ||||| || |||||| Sbjct 364747 TACATGACCTTGCGCTGACCAGGCTTGAGTCCATCCATGACG-GAGGGAATGGAACGC 364691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214030022400