Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq20 188 8e-43 seq82 145 9e-30 seq52 113 5e-20 seq27 93.3 5e-14 seq59 89.7 6e-13 >seq20 Length=946066 Score = 188 bits (208), Expect = 8e-43 Identities = 606/933 (65%), Gaps = 17/933 (2%) Strand=Plus/Plus Query 80821 TTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTC 80880 || || ||||| || |||||| | || || |||||||||||||| |||||||| | | Sbjct 121079 TTGAGATTGCGAGTGACAACCTGAGTGACTTCATGAAGTTTCTGGAAGTCGAACTCGCCA 121138 Query 80881 CCCTTC------ACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTC 80933 | ||| || || | || || || || || || || ||||| || || ||||| Sbjct 121139 CGCTTATAGTCAACGAAAGATGGCAAAGCG-AGAGAGGCAAGGTTGCAGACAGCAACCTC 121197 Query 80934 TTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAG 80993 || | | | ||| |||| | || || ||||| | |||||| || ||||| || Sbjct 121198 ATCGGGAGCAGTATACTCAATAATCTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAG 121257 Query 80994 GTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGT 81053 ||| |||||||| ||| |||||| || |||||||| |||| | ||| |||| || Sbjct 121258 GTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGT 121317 Query 81054 CTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAA 81113 || ||| | || ||| ||||| | ||| | || | || || || |||| Sbjct 121318 TTCAGTCTGAGCCTCGAGAATGGCATACCAGAGCTTCTGAGCACGAACAGTCTCGCGGCC 121377 Query 81114 TTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAG 81172 ||| ||| | | || ||| |||| | || |||| | || | | |||| Sbjct 121378 ACGGCCCTCGCGCTCGTAACGATGGTAGAGCT-CTTCAAACTCATCGCCATAGACGTCAG 121436 Query 81173 TGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCT 81232 ||| | ||| |||||| ||||| | || ||| || || | || ||| || Sbjct 121437 CAAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCT 121496 Query 81233 TCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCAT 81292 |||||||| || |||||||||||||| ||| || |||||| || | || || | Sbjct 121497 TCATGAAAAGATCTGGGATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTTCTTCCT 121556 Query 81293 CACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGAT 81352 || || || ||||| || || || | | || || |||||||||||||| || | Sbjct 121557 TGCCGTGATTCTTGCGCAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGT 121616 Query 81353 ACACGGCGATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGT 81409 | | ||| | | ||| ||| | |||||||| | ||| ||||| ||||| || Sbjct 121617 AGATGGCAAATGCACCCGGGCGCTTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGT 121676 Query 81410 TAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCG 81469 | | ||||| | |||||| |||| ||| | ||| ||| || || || |||| | Sbjct 121677 TGTAAACACGAAGCATAGGAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATG 121736 Query 81470 ACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAAT 81527 | || |||| || | | ||| ||||| |||| || || || | ||| || || Sbjct 121737 AGCCAGTGGCACGGATGCGATGCACATTGA--GACCAATACCGCCAGCAGTCTTGGAGAT 121794 Query 81528 CTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAG 81587 | ||||| || | || || ||||| ||||| ||||| |||| |||||||||| Sbjct 121795 GAGTGCACAGGTCTTAAGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAAT 121854 Query 81588 CAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGC 81647 | ||| || |||||||||||| || ||| || ||||| ||||| |||| || Sbjct 121855 AAGGAAGCAAGATGACATCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGC 121914 Query 81648 GTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTC 81707 ||| |||| || | ||||| ||| || ||||| | | | ||| || || Sbjct 121915 GTGTGTGAAGTACTTCTGGGACATGTAGTCGTATGTTTCAATCGCCTTTTCAATGTCTTC 121974 Query 81708 ACCGTGAATACCGATAGCTACACGCATAAACAT 81740 || || || || | || |||||||| | ||| Sbjct 121975 TCCATGTATGCCTACGGCAACACGCATCAGCAT 122007 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || |||||||||||||| |||||||| || |||||| || | |||||| ||| Sbjct 120290 GTACGGAGATAGTACATGCCGGTCTTGAGACCAAGCTTCCATCCAGCAAAGTGCATGGAA 120349 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | ||||| | || |||| |||||||| |||||| ||||| ||| Sbjct 120350 GTGATCTTACCCATGGTGGGTTCCTTCATGTGGATGTTCAAAGACTGGGACTGGTCAATG 120409 Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180 ||||| ||||| || || ||||| Sbjct 120410 AAAGCACCACGGTCAGCGGCCAT 120432 >seq82 Length=92890 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| |||| ||| | ||| | ||| Sbjct 13670 ACCGGCAAGACCATCACCCTCGAGGTAGAGTCTTCGGATACCATCGACAATGTCAAGAGC 13611 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| |||||||| || ||||||||||||||||| | || || || || ||| Sbjct 13610 AAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCTTGATCTTCGCCGGAAAG 13551 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||| |||| ||| ||| | | ||||| || ||||||||||||||||||| || Sbjct 13550 CAGCTCGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTCTCCAC 13491 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | || || |||||||| Sbjct 13490 CTTGTGCTTCGCCTGCGCGGTGG 13468 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || |||||||| ||||| || ||||| || ||| Sbjct 13176 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCG 13117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || ||||| |||||||| || |||||||||||||| Sbjct 13116 GACACAATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 13057 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || || || | ||||| || Sbjct 13056 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 12997 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || ||| | || | || || || ||||| Sbjct 12996 ATCCAGAAAGAATCGACCCTCCATTTGGTACTCCGCCTGCGTGGTGG 12950 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || | || |||||||| | Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || ||||| |||||||| || ||||| |||||| Sbjct 12888 GACACAATCGACAATGTAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 12829 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| | ||||| | || || || | ||||| || Sbjct 12828 CAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTTCCGACTACAAC 12769 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || || || ||||| | || | ||| | |||||||| || ||||| Sbjct 12768 ATTCAGAAAGAGTCCACATTGCACTTGGTCCTCCGTCTTCGTGGCGGACA 12719 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || || || || || |||| ||| | || | ||| | Sbjct 13380 ACCGGCAAGACCATCACACTCGAAGTCGAATCCTCAGATACCATCGACAACGTCAAGTCG 13321 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||| || |||||||| |||||||| || | || || || || ||| Sbjct 13320 AAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAACGCTTGATCTTCGCCGGAAAG 13261 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||| || | |||||||| | ||||| || |||| ||||| || || ||||| Sbjct 13260 CAGCTCGAAGACGGCCGTACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTTCAC 13201 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| ||||||| || ||||| Sbjct 13200 CTTGTCCTGCGTCTGCGTGGTGG 13178 >seq52 Length=336907 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| || ||||||||||||||||| ||||| || || || ||||| || || Sbjct 188515 AATGTGAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATC 188456 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| |||||||||| || || || | ||||| || |||| ||||| Sbjct 188455 TTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAG 188396 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | ||| | ||||| || || || Sbjct 188395 TCGACTCTCCACTTGGTCCTCCGTCTCCGTGGCGG 188361 >seq27 Length=812739 Score = 93.3 bits (102), Expect = 5e-14 Identities = 281/426 (66%), Gaps = 16/426 (4%) Strand=Plus/Minus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || || || ||||| ||| || || ||| || || ||||| || ||||| || Sbjct 400840 TGTCGAGGGTATCTTCTTCAGTGGCTCCTTTGCTTCCATCTTTTGGCTCAAGAAGCGTGG 400781 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCA 64856 ||||||||| |||||| | || || |||||||| |||||||| || ||||| | ||| Sbjct 400780 CCTGATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACTG 400721 Query 64857 AGAATTTGC--GGTTACCCTGTTCAGCCACCTCAAGGA-CAAACCATCACATGGGACTAT 64913 || ||||| | || | || ||| | |||||| | | ||| || | | | | Sbjct 400720 CGACTTTGCTTGCTTGCTCTTCTCA--CTCCTCAACAACCGCCCCAGCA-AGGATGCCGT 400664 Query 64914 AATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCC 64973 | | ||| | | |||||| || || || |||| ||| |||| | || ||||| Sbjct 400663 CAAGGCTATCATCACTGAGGCTGTGGAGATCGAGCAGGAGTTCCTTACCGAGGCTCTTCC 400604 Query 64974 GTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGA 65033 ||| ||| | |||||| | ||| | ||| ||||| || || ||||| || || Sbjct 400603 CTGTGCTCTGCTGGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGTTTGTCGCTGA 400544 Query 65034 TCGCCTGCTTACTCAG--TTTGG---TATTAAGCCCTACTGGAATTCTTCAAATCCATTT 65088 || ||||| || | |||| | ||| ||| || || |||| || || Sbjct 400543 CCGTCTGCT--CTTGGCTCTTGGCAACACCAAGGTATAC---AACTCCACAAACCCCTTC 400489 Query 65089 GACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGT 65148 |||| ||||||| ||| || | || ||||| ||||| ||||| ||| | || ||| Sbjct 400488 GACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGT 400429 Query 65149 GATTAC 65154 || ||| Sbjct 400428 GACTAC 400423 >seq59 Length=254989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || ||||| ||||| || || || || || ||||| | ||| Sbjct 239741 GACAAGGAGGGCATTCCCCCTGACCAACAGCGCCTCATCTTCGCCGGCAAGCAGTTGGAG 239682 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| ||||| || | || || || |||| ||||| ||||| ||||| | ||| | Sbjct 239681 GATGGCCGTACTCTTTCTGATTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTT 239622 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 239621 CGCCTCCGTGGTGG 239608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308346882560