Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq82 89.7 3e-13 >seq82 Length=92890 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || | ||| ||| || |||||||| || || ||| Sbjct 12722 CCGCCACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAA 12781 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 |||||||| |||| || | || ||||| || || || | ||||| ||||| || || Sbjct 12782 AGTGTTCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGG 12841 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCAC 34658 | |||||||| || |||||| |||| |||||||| ||| ||| || Sbjct 12842 ATACCCTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCG-ACTCAAC 12900 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || || || |||||||| Sbjct 12901 TTCCAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| || || || || ||||| || || || || || || | |||||| Sbjct 12968 ACCAAATGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCA 13027 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | |||||||||||| || || | || ||||||||| || Sbjct 13028 AGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT-TG 13086 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTT 34674 | || | || ||| | |||||||| || | ||||| |||| ||| || || Sbjct 13087 AATCTTGGACTTGACGTTGTCGATTGTGTC--CGATGATTCCACCTCCAGGGTAATTGTC 13144 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || | || || || ||||| ||||| Sbjct 13145 TTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 13176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728495299104