Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq82 131 1e-25 seq59 84.2 2e-11 >seq82 Length=92890 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || |||||||| |||||| | ||||| || || |||||| | || Sbjct 13176 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACAATTACCCTGGAGGTGGAATCATCG 13117 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||| ||||| || || || || ||| Sbjct 13116 GACACAATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 13057 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | ||||| | || | ||||| |||||| Sbjct 13056 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 12997 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || |||||| | |||||||| | || |||| ||||| || Sbjct 12996 ATCCAGAAAGAATCGACCCTCCATTTGGTACTCCGCCTGCGTGGTGGTAT 12947 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || || || ||||| ||| | || || | || || | ||||| Sbjct 13382 TGACCGGCAAGACCATCACACTCGAAGTCGAATCCTCAGATACCATCGACAACGTCAAGT 13323 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || || || |||||||| || || || || || || || || | |||||| | Sbjct 13322 CGAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAACGCTTGATCTTCGCCGGAA 13263 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | |||||| | ||| | || || |||||||| || |||||||| ||| | | Sbjct 13262 AGCAGCTCGAAGACGGCCGTACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTTC 13203 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | | || ||||| |||| ||||| || Sbjct 13202 ACCTTGTCCTGCGTCTGCGTGGTGGTAT 13175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || | ||||| || || | Sbjct 12948 ATGCAGATCTTCGTCAAGACACTGACTGGAAAGACCATCACATTGGAAGTTGAGTCGAGC 12889 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || || || || || || || || Sbjct 12888 GACACAATCGACAATGTAAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 12829 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || || ||||| ||| | || ||||||| |||||| Sbjct 12828 CAGCGCCTCATCTTCGCTGGTAAGCAGTTGGAGGACGGCCGAACACTTTCCGACTACAAC 12769 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || || || ||||| | ||| | || || || Sbjct 12768 ATTCAGAAAGAGTCCACATTGCACTTGGTCCTCCGTCTTCGTGGCGG 12722 >seq59 Length=254989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139 |||||| || ||||| || || || |||||||| | || | ||||||||| || ||||| Sbjct 239742 AGACAAGGAGGGCATTCCCCCTGACCAACAGCGCCTCATCTTCGCCGGCAAGCAGTTGGA 239683 Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || | || |||| ||||||||||| || |||||||| ||| | || ||||| | Sbjct 239682 GGATGGCCGTACTCTTTCTGATTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 239623 Query 27200 GCGTTTGCGGGGTGGC 27215 || | || |||||| Sbjct 239622 TCGCCTCCGTGGTGGC 239607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916834293760