Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq82 172 1e-37 seq20 132 1e-25 seq59 120 7e-22 seq52 105 2e-17 >seq82 Length=92890 Score = 172 bits (190), Expect = 1e-37 Identities = 151/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| || ||||| || |||||||| || |||| ||||| | || ||| Sbjct 13193 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTACGGCCGTCT 13252 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | |||||| ||||||||||||| |||||||| ||| Sbjct 13253 TCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCCTTCCTTATCC 13312 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || ||| ||| || ||||| ||||| ||| Sbjct 13313 TGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACTTCGAGTGTGATGGTC 13372 Query 211083 TTTCCCGT 211090 || || || Sbjct 13373 TTGCCGGT 13380 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || ||||| |||||||| || || | || || | |||||||| |||||| Sbjct 12974 TGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGC 13033 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| |||||||| || || |||||||| ||||||| ||||||||||| || ||||| Sbjct 13034 TTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 13093 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| ||||| ||||| || ||| ||||| || || || ||||| || || Sbjct 13094 GACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTC 13153 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | ||||| Sbjct 13154 AGAGTCTTGACGAAAATTTGCAT 13176 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| |||||||| || ||||||||||| || || | | ||| | |||||| Sbjct 13483 AGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 13542 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| || ||||| ||||| | || ||||| ||| Sbjct 13543 TCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCC 13602 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| || || || |||||||| ||||| ||| Sbjct 13603 TGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACCTCGAGGGTGATGGTC 13662 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 13663 TTGCCGGTGA 13672 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| | ||||||||||| || ||||| || || | ||| || Sbjct 12727 ACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGT 12786 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||| |||||| || |||||||| ||||| || ||||||||||| | || Sbjct 12787 TCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACC 12846 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 ||||| ||||||||||| || || || ||||| ||||| ||| ||||| || Sbjct 12847 CTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTC---GCTCGACTCAACTTC 12903 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| |||||||| || || ||||| || || | |||||| Sbjct 12904 CAATGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 >seq20 Length=946066 Score = 132 bits (146), Expect = 1e-25 Identities = 193/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| ||| |||||| ||||| |||||||| | || Sbjct 121258 GTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGT 121317 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 |||| |||||| |||||||| || ||| |||| ||| || || ||||||| | | Sbjct 121318 TTCAGTCTGAGCCTCGAGAATGGCATACCAGAGCTTCTGAGCACGAACAGTCTCGCGGCC 121377 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || || |||||| | ||||||||| || || || |||||||| ||| | Sbjct 121378 ACGGCCCTCGCGCTCGTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGC 121437 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 || || || ||||| ||||||||||| | |||| | ||||| |||| || || || Sbjct 121438 AAGGCCAGGGGCCTCGTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCTT 121497 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||| || || | | |||||| ||||||||| Sbjct 121498 CATGAAAAGATCTGGGATCCAGAGGGCATAGAA 121530 >seq59 Length=254989 Score = 120 bits (132), Expect = 7e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| |||||||| || |||||||| ||||| | ||| || | ||||| Sbjct 239623 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCC 239682 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||| ||||||||| |||||||| ||||| ||||||||||| |||| || |||||||| Sbjct 239683 TCCAACTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCAGGGGGAATGCCCTCCTTGTC 239741 >seq52 Length=336907 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| ||||| ||||| || |||||||| || || | || || | ||||| Sbjct 188376 AGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 188435 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| ||||| || || |||| || ||||||||| Sbjct 188436 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 188495 Query 211023 TGGATCTT 211030 || ||||| Sbjct 188496 TGAATCTT 188503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147722729120