Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq82 163 7e-35 seq100 116 9e-21 >seq82 Length=92890 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || |||||||| |||| ||||| |||| | ||| | |||||||| |||||| Sbjct 12974 TGGAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGC 13033 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| || || |||||||| || |||||||||||||||||||| ||||| Sbjct 13034 TTGCCAGCGAAGATGAGACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTG 13093 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||||| ||||| || | |||||| || | || || |||||||| ||| Sbjct 13094 GACTTGACGTTGTCGATTGTGTCCGATGATTCCACCTCCAGGGTAATTGTCTTGCCAGTC 13153 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||| || | ||| | |||||| Sbjct 13154 AGAGTCTTGACGAAAATTTGCAT 13176 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||||||||| ||||||| ||||| |||| ||| || | |||||| Sbjct 13483 AGCACAAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 13542 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || || || || ||||| || Sbjct 13543 TCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCC 13602 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||| || || | || || || | ||||| ||| Sbjct 13603 TGGATCTTGCTCTTGACATTGTCGATGGTATCCGAAGACTCTACCTCGAGGGTGATGGTC 13662 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 13663 TTGCCGGT 13670 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||||||||| || || || || || |||| ||||| || | || || Sbjct 13183 ACGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 13242 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| || |||||||| | ||||| ||||| || ||||| || Sbjct 13243 ACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGGTCAGGAGGAATGCC 13302 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| || |||||||| ||||||| ||| || || | Sbjct 13303 TTCCTTATCCTGGATCTTCGACTTGACGTTGTCGATGGTATCTGAGGATTCGACTTCGAG 13362 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 13363 TGTGATGGTCTTGCCGGTCA 13382 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| | ||||| ||||| || | ||||| |||| | || Sbjct 12727 ACGAAGACGGAGGACCAAGTGCAATGTGGACTCTTTCTGAATGTTGTAGTCGGAAAGTGT 12786 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || | |||||| ||||||||||| || || || ||||| || || ||||| Sbjct 12787 TCGGCCGTCCTCCAACTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATACC 12846 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| ||||| ||||| | || || || || Sbjct 12847 CTCCTTATCCTGGATCTTGGACTTTACATTGTCGATTGTGTCGCTCGACTCAACTTCCAA 12906 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| || || | ||| | ||||| Sbjct 12907 TGTGATGGTCTTTCCAGTCAGTGTCTTGACGAAGATCTGCAT 12948 >seq100 Length=21735 Score = 116 bits (128), Expect = 9e-21 Identities = 188/270 (70%), Gaps = 3/270 (1%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 ||||||||||||| || | ||||| || | | || ||| ||||| | | ||| Sbjct 21297 TTATATTTAATATATGCTCTTTTTTCAGGGCTAGTTGGAACTGCGTTTTCAGTATTGATA 21238 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 || |||||||| | | || || ||| | | || | ||| |||| | || || Sbjct 21237 AGATTAGAATTGTCAGGGCCTGGAGTTCAG---TACATTGCTGATAACCAATTATATAAT 21181 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 |||||| || || ||||| || |||||||||||||| | |||||||| | | | ||| Sbjct 21180 AGTATTATAACAGCTCATGCTATTATTATGATTTTCTTTATGGTTATGCCAGCTTTAATA 21121 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || ||||| ||||||| | |||||||| | || | ||||||||||| || || Sbjct 21120 GGAGGTTTTGGAAATTTCCTACTTCCTTTAGGTTTAGGAGGTCCTGATATGGGATTCCCT 21061 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTA 7713 || ||||| ||||| |||| || |||| || Sbjct 21060 AGACTTAATAATATTAGTTATTTATTATTA 21031 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 371370 TAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTAT 371429 ||||||||| | || ||||| |||||||||||| | || || ||||| || || Sbjct 20803 TAATTTATGTAATCTTATTCCAGGACTTCTCATATTAAAAGTAGTTGTCATAAAATTCAT 20862 Query 371430 AGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGAC 371486 || || | |||| ||||||||| | ||||||||| | ||||||||||||||| || Sbjct 20863 TGCCCCCAAAAGACTAGATATACCAGAAAGATGTAACCCAAATATTGCTAAATCAAC 20919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526799559872