Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq20 221 2e-52 >seq20 Length=946066 Score = 221 bits (244), Expect = 2e-52 Identities = 772/1193 (65%), Gaps = 34/1193 (3%) Strand=Plus/Plus Query 77675 CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTAT 77734 |||||| | ||| || || || || || || ||||||| | | ||| | || || Sbjct 121162 CAAAGCGAGAGAGGCAAGGTTGCAGACAGCAACCTCATCGGGAGCAGTATACTCAATAAT 121221 Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794 ||| || || || ||| || ||| || || || || | ||||||||||| | || Sbjct 121222 CTCAGTGCAGAGGTTAGAACTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTT 121281 Query 77795 GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854 ||| | ||||| || || || || || | || |||||| |||| | |||| ||| | Sbjct 121282 GCAGGCATCCTTGTATAGCATGAAGGGGTTACCAGTTTCAGTCTGAGCCTCGAGAATGGC 121341 Query 77855 TTTCCAGACGACTCTAGCTTTT-ATCATAGATTTGTATCGC--------CTCTCTCTTTC 77905 | ||||| |||| | | || || || |||| | ||| | || Sbjct 121342 ATACCAGA--------GCTTCTGAGCAC-GAACAGTCTCGCGGCCACGGCCCTCGCGCTC 121392 Query 77906 ATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTC 77965 || || || ||| |||||| ||||| || | || ||| | | |||||| || Sbjct 121393 GTAACGATGGTAGAGCTCTTCAAACTCATCGCCATAGACGTCAGCAAGGCCAGGGGCCTC 121452 Query 77966 ATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGG 78025 || ||||| | ||||| ||| ||||| | |||| || || ||||| || ||||| || Sbjct 121453 GTTGGGGCAGAACAATGTCCATTCACCGTTCTCCTGGACACGCTTCATGAAAAGATCTGG 121512 Query 78026 TATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTT 78085 ||||| || ||| || ||||| |||| | | |||||| || || |||||| Sbjct 121513 GATCCAGAGGGCATAGAAGAGATCGCGGGCACGAACTTCTTCCTTGCCGTGATTCTTGCG 121572 Query 78086 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCC 78145 || || || || | | | ||||| ||||||||| || || || || || | | || Sbjct 121573 CAGGTCAAGGAAACCAAAGACATCAGCATGCCATGGCTCGAGGTAGATGGCAAATGCACC 121632 Query 78146 AGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACAT 78205 || || || || || |||||||| | ||| | || ||||| || ||||| | | ||| Sbjct 121633 CGGGCGCTTGTTGCCACCCTGATCGACATAACGAGCAGTGTTGTTGTAAACACGAAGCAT 121692 Query 78206 TGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT 78265 ||||| | |||||| || || ||||| || || || || ||| | || || || Sbjct 121693 AGGAATGAGACCGTTTGAAGTACCATTAGTGCCTCCGATGTATGAGCCAGTGGCACGGAT 121752 Query 78266 ATTA--CTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC 78323 | | || || | || || || || || |||| || || || || || || Sbjct 121753 GCGATGCACATTGAGA--CCAATACCGCCAGCAGTCTTGGAGATGAGTGCACAGGTCTTA 121810 Query 78324 AATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGAC 78383 | ||| ||||| |||||||| || ||||| ||| |||||| || ||| || || ||| Sbjct 121811 AGTGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCAATAAGGAAGCAAGATGAC 121870 Query 78384 ATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTT 78443 || ||| | | || ||||| || || | ||| || || || || || || | || Sbjct 121871 ATCTGAGGCGAAGGTGTGCCTGCGTTGAAGAGTGTGGGGGAAGCGTGTGTGAAGTACTTC 121930 Query 78444 TCAGAAA-GTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTAC 78502 | || | |||| | |||||||||||| || ||| ||||| | ||| || ||||| Sbjct 121931 TGGGACATGTAG-TCGTATGTTTCAATCGCCTTTTCAATGTCTTCTCCATGTATGCCTAC 121989 Query 78503 CGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAA 78562 || |||||||||| |||||| || |||| ||| | ||| || || | | Sbjct 121990 GGCAACACGCATCAGCATATGTTGTGGTCGCTCAGCAACCTTGCCGTTGATGCGGAGGAG 122049 Query 78563 GTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAA 78620 |||||| ||| | || || |||||||| | | ||| ||||| || | ||||| Sbjct 122050 GTATGAACGTTCAAGGGTCTTGAAACCAAAGAACTGGTAGTTGAAA--TCGCGGTCGTAG 122107 Query 78621 ATAATAACAGAATTTAGTTTATCT--TTGTATTTGGTAACAATATCCATGACAGTAGTTG 78678 | ||| |||| || || | |||| ||| ||| ||||| | ||| | || Sbjct 122108 ACAATGGCAGAGTTGAGCTCATCTGCGTGTGCCTGG--ACAATCTTGTAGACTGACTCTG 122165 Query 78679 AAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTA 78738 | || ||||| || | || || || || || ||||| || | | || | || | Sbjct 122166 AGATCATAGGCAATTGCTTGCCGTTCTTGGGGTTGACATAATTGTACAGGTCCGCGATGA 122225 Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || || || | || || || | |||||| || || || || || || | ||| || | Sbjct 122226 CAGCAGAGAACTGCTTCTTGGTCTGCTTGTGAAGGTTGGACACGGCAATACGTGCGGCCA 122285 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCCGC 78850 |||| || || || ||||| |||| | || || |||||| | || ||||| Sbjct 122286 GAATGGCGTAGTCTGGATG-TGTGGTGGTCATGTATGCTGCTGTCTCGGCCGC 122337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666299192320